BAC Information

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BAC

Clone NameMSMg01-092L16
Chromosome5 (Build37)
Map Location 26,532,277 - 26,532,400
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689
Downstream geneLOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L16.T7 (MSMg01no092_l16.b1)MSMg01-092L16.TJ (MSMg01no092_l16.g1)
ACCAG310347AG310348
length739756
length of high quality
(start - end)
124 (175 - 298)301 (135 - 435)
definitionCHROMAT_FILE: MSMg01no092_l16.b1 PHD_FILE: MSMg01no092_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:41 2005CHROMAT_FILE: MSMg01no092_l16.g1 PHD_FILE: MSMg01no092_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCNNNNNNNNCCCCTCCCCCNCCCCCCCNNNCCCCGCCATCT
CTTCCCATCATAATTGCGGCGCTAATAGACTACTTTCGGAGCGGATCCGC
GGAATTCTCTCTATCTAAAAAAAGAAAAATTCTCTCTCCCTTAAGTTGCT
TCTTTAACTTATACTATTAACCAACCTATAACCACATGTCCTGGGGTGAC
TGCCATGGTCCAATGGATGCTGTTACATTGATTACACGTGTGCCTTGGTG
CATTGTGGGAAAGACAAACGTTCCTGGTTTAGGGTCCTGGGAAGGCAGAA
TATGTTAGCCAACATTGGCTGATAAGCTCTCCAGTCAGTTAGGGAGTAGC
CATGTGATCCAGGATTTTTTTTTTTCACTCTAGGAATAGATTGGATAGGA
AAGGCTATTGTTGCCCACAGGCTTTGTATTAAGAAAAAAGTGAGGTGTTA
CTAGTCTCCACAGCAATGTGTCGCTGGCTGGTTTGCATAATCTTACAATT
TGTGGTTTTTTTTGAGCTGCACCAAGCATTGCTGTCAGGAAGGTTGTGGA
GCAAGGGGAGTCTTACCTGCCCTTGTGAGGTGTTGTGCAGTCTTTAGGAA
GTGGATCTACCTAAAGGAATTGGGAACTCCGGATAAAGGTTGAAAAGGCA
ACGCAATAGTTGTGTTCTCCATGAATTCCCCCGCCAACCTTAACCGATTC
TCCCTTTGTTCTTTTTTTATTAACTCTCGGATTTTTGGA
NNNNNNNNCCCCCGCCCCCCANCCCACCCCNNGCCCCGNNNACCCCCACC
CCTCCTCCCCCGATGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAAGATCATGGGC
CAGCAGCAAAAGACCCTGTCATCCACACAGACCACACACACATACATACA
TACATACATACATACATACATACATACATACATACATACATACATACACG
TGCACACACACACACTGAATGAGCGGTGTGTAATAGACCTAAATAGATAC
TTCCACAAAGAAGAGTGGACAATAAGATTCAAGAAGATCACCTAATGTCA
CTGATCATTAGAGAAACGCAAATTTAAGCCACAGAGAATGGTGCCTGTAA
GCACTTTGTAATGTCGTACACCCCCTGGGAAGTGGATAGCGGATGTGCTG
ACACCCAATGGCAGAACCCAGCCCCGCTGTAGCAGCAAGCAAGACCAAGA
CAGTCCCTCACTAGAAGAACTAGCGCGCCCAAAGAGTCTAGCTTTGAGGC
TGACTGCTGCTCGCTTAATTGACTTTTTTGTCGGAGATCACAATAGAAAT
AAAGGGCCTGACCCGCGCTCCATGAGCTCCCGGGGTACCGGCGACCCCAA
TACCCCCGGTCCCACCTCGCCACATGCCCGGGTTCCCCCCCCCCTTTACC
TACACGCCAGCACCTGACCTACATCCCCCCGCTCCATTCCCTTATTCACA
CCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l16.b1 MSMg01no092_l16.b1 CHROMAT_FILE:
MSMg01no092_l16.b1 PHD_FILE: MSMg01no092_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:41 2005
         (124 letters)



>mm_chr5_26532077_26532600
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctataaccacatgtcctggggtgactgccatggtccaatggatgctgttacattgatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctataaccacatgtcctggggtgactgccatggtccaatggatgctgttacattgatta 260

                                                                       
Query: 61  cacgtgtgccttggtgcattgtgggaaagacaaacgttcctggtttagggtcctgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgtgtgccttggtgcattgtgggaaagacaaacgttcctggtttagggtcctgggaag 320

               
Query: 121 gcag 124
           ||||
Sbjct: 321 gcag 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)