Query= MSMg01no094_d06.b1 MSMg01no094_d06.b1 CHROMAT_FILE:
MSMg01no094_d06.b1 PHD_FILE: MSMg01no094_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:45 2005
(315 letters)
>mm_chr5_136139822_136140537
Length = 716
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgctgc-ccaaagacatggatctggttttacctgagcaaaggtggctaaggt 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattctttgctgcagcaaagacatggatctggttttacctgagcaaaggtggctaaggt 344
Query: 64 ttaagggagtgcctccactgccggtggctggctgagtcccctgctaggttgctgtggaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttaagggagtgcctccactgccggtggctggctgagtcccctgctaggttgctgtggaca 284
Query: 124 accccactgtcatattcacaggtggttccttcagtagtgaggatgaggtcattaaagtta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 accccactgtcatattcacaggtggttccttcagtagtgaggatgaggtcattaaagtta 224
Query: 184 gaggagcacatatgattactgataagttatttcttctctggtgaaaagagccaattcaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gaggagcacatatgattactgataagttatttcttctctggtgaaaagagccaattcaag 164
Query: 244 ccagcttagactatgtaaaggcaggtttattggtatgctgcaggcgagttcactggtccc 303
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 163 ccagcttagactatgtaaaggcaggtttattgggatgctgcaggcgagttcactggtctc 104
Query: 304 aatgatggaagt 315
||||||||||||
Sbjct: 103 aatgatggaagt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_d06.g1 MSMg01no094_d06.g1 CHROMAT_FILE:
MSMg01no094_d06.g1 PHD_FILE: MSMg01no094_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:45 2005
(525 letters)
>mm_chr5_136003830_136004754
Length = 925
Score = 824 bits (426), Expect = 0.0
Identities = 477/504 (94%), Gaps = 17/504 (3%)
Strand = Plus / Plus
Query: 1 cagtgtctgatctatagccaccaaaagcacacatcaaaaggcagaggtcccctagggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cagtgtctgatctatagccaccaaaagcacacatcaaaaggcagaggtcccctggggtcc 260
Query: 61 agcaaggcggtttgtctgtctgtgaagtcaggccgggaggcgctgaggatattgtctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaggcggtttgtctgtctgtgaagtcaggccgggaggcgctgaggatattgtctgga 320
Query: 121 gcatggcttaccccatcaactttgtcccaccccactcctcccccgccttctgaattacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatggcttaccccatcaactttgtcccaccccactcctcccccgccttctgaattacat 380
Query: 181 tgatttgtgtatttgggtgggggcccgtgtgacagtagaggacaatgctctgaagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttgtgtatttgggtgggggcccgtgtgacagtagaggacaatgctctgaagtcagt 440
Query: 241 gttctccttctgc---gtgggtcccaggaattaaactcagatcatcttgctgtcccaggc 297
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctccttctccttcgtgggtcccaggaattaaactcagatcatcttgctgtcccaggc 500
Query: 298 ttgttcatgttccatcccaaactcagcaccataaaacacacattgctaagttctctctct 357
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 501 ttgttcatgttccatcccaaactcagcaccataaaacacacatcgctaagttgtctctct 560
Query: 358 ctctctctctctctctctctctctctcccttctttcctctctctcttcctttctcttcct 417
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ctctctctctctc--------------ccttctttcctctctctcttcctttctcttcct 606
Query: 418 tccttccttccttccttccttccttccttccttcctttctttctttctttctttctttct 477
||||| ||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 607 tcctttcttccttccttcctttctttctttctttctttctttctttctttctttctttct 666
Query: 478 ttctttctttctttctctctctct 501
|||||||||||||||| |||||||
Sbjct: 667 ttctttctttctttctttctctct 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
