BAC Information

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BAC

Clone NameMSMg01-094E16
Chromosome5 (Build37)
Map Location 40,688,682 - 40,689,024
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E16.T7 (MSMg01no094_e16.b1)MSMg01-094E16.TJ (MSMg01no094_e16.g1)
ACCAG311503AG311504
length667774
length of high quality
(start - end)
300 (43 - 342)343 (138 - 480)
definitionCHROMAT_FILE: MSMg01no094_e16.b1 PHD_FILE: MSMg01no094_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:53 2005CHROMAT_FILE: MSMg01no094_e16.g1 PHD_FILE: MSMg01no094_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGAGAGGATCCGCGGAATTCTTTGTTCTCCTCTGAGCCCCA
TTTTTTAATGGGGTTATTTGATTTTCTGAAGCCACCTTCTTGAGTCCTTT
GTATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC
TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGTCCA
TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATTTTTTTCACCGCCTCT
CGCTTTTATGTGAAGATCCTTGATCCACTTAGATTTGACCTTAGAACAAA
GAGATAAGTATGGATCGATTCGGATTCTTCTACACGATAACAACCAGTTG
TGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTT
AGCTCCCTTGTTGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTG
GGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGCCTCTATACCCCTAC
CCTGCAGTTTTTTATCACAATTGCTCTGTAACCAAACCTTTAGTTCTGGC
TCGCCGATTCCCCCCAC
NNNNNNNNNNNNNTTTTNNNNNNNNNNNNNTTTTTCCNTCCTTCTTTTTC
CCCCCACCCCNTTCTTCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGGTTTTGA
AGATTGTCTCTTTCTTTAGAGCTAGAGTGCATACCCTAAGACCTTGTGAA
TGGCTCAAGCCCCTGAATGTCTGCAGAATACATGAATAAATGAATAAACA
ATTAAATTGCCAGGTAAGTCCTTTTTATCTCTGTCACTGTCCTTGTCTTT
GTTTTGGATGGACTGAATACTTTGAAGAGAAAACCTTATATATTTTATTC
AGTGCTGTCTAAAGGCTTATTTTCTTTTCCATAAAATTGCTTCCAAGTAT
CAGTGAATATACTCGTCACTGCTATCACAACTGAATAGTAAAGTGAAAAA
ATAGTCTGTAAGAAAACAAAACAAAACACAACACAACAACAAAACAAAAA
AGCAAACAAACAAATGAATCACCAAATAAGGATGCAGTCCTTGGGTGATA
AGCCAAACAAAGGCCTTCATGTTAAACAAATACCTTTCAGTAGTCACTGT
CACCATTAATGTTCCCCCATGCTTTTCATCAATTCATCAGAAAAGAGATA
TTGCAGACTCTCTTGCTAGGCATTACCCATATTAAATAAAAATATTGAAC
GAAGGAATTGATATAGACTATTGAAGCCTGACTGGAACACACTATGGTGA
TAATAGCAAACAAATTCCCTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e16.g1 MSMg01no094_e16.g1 CHROMAT_FILE:
MSMg01no094_e16.g1 PHD_FILE: MSMg01no094_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:53 2005
         (343 letters)



>mm_chr5_40688482_40689224
          Length = 743

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagggttttgaagattgtctctttctttagagctagagtgcataccctaagaccttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 543 tttagggttttgaagattgtctctttctttagagctagagtgcatagcctaagaccttgt 484

                                                                       
Query: 61  gaatggctcaagcccctgaatgtctgcagaatacatgaataaatgaataaacaattaaat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 483 gaatggctcaagcccctgaatgtctgcagaatatatgaataaatgaataaacaattaaat 424

                                                                       
Query: 121 tgccaggtaagtcctttttatctctgtcactgtccttgtctttgttttggatggactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 423 tgccaggtaagtcctttttatctctgtcactgtccttgtctttgttttggatggacttaa 364

                                                                       
Query: 181 tactttgaagagaaaaccttatatattttattcagtgctgtctaaaggcttattttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tactttgaagagaaaaccttatatattttattcagtgctgtctaaaggcttattttcttt 304

                                                                       
Query: 241 tccataaaattgcttccaagtatcagtgaatatactcgtcactgctatcacaactgaata 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tccataaaactgcttccaagtatcagtgaatatactcgtcactgctatcacaactgaata 244

                                                      
Query: 301 gtaaagtgaaaaaatagtctgtaagaaaacaaaacaaaacaca 343
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 gtaaagtgaaaaaatagtctgtaagaaaacaaagcaaaacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)