Query= MSMg01no094_f05.b1 MSMg01no094_f05.b1 CHROMAT_FILE:
MSMg01no094_f05.b1 PHD_FILE: MSMg01no094_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:55 2005
(475 letters)
>mm_chr5_152207648_152208523
Length = 876
Score = 833 bits (431), Expect = 0.0
Identities = 463/483 (95%), Gaps = 17/483 (3%)
Strand = Plus / Minus
Query: 5 gaattcaaagcaggatccattataatgacaaagccagtttccttcacagcactataatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcaaagcaggatccattataatgacaaagccagtttccttcacagcactataatca 568
Query: 65 gaaatgtttattgcgatcattacctaataagagctggttaaacttttacaacaggaagat 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaaatgtttattgagatcattacctaataagagctggttaaacttttacaacaggaagat 508
Query: 125 tgtcttttgatttcaaaactaatgaaagtgtgttgccatgacaacgtctctctccacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtcttttgatttcaaaactaatgaaagtgtgttgccatgacaacgtctctctccacttt 448
Query: 185 tgtacctctaatttttactctaaattacttgtattcgtctgccagacagcacgtgaatat 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 tgtacctctaatttttactctaaattacttgtattcgtctgccagacagtacgtgaatat 388
Query: 245 tttaacttggtctctcgctgtgccattttgaataaatggaatgttcatatttatacagac 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 387 tttaacttggtctctcgctgtgccgttttgaataaatggaatgttcatatttatacagac 328
Query: 305 atctgaggaaattgatctctaaaacgtctctcattctac-ttgatgatctaaactttaat 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 atctgaggaaattgatctctaaaacgtctctcattctactttgatgatctaaactttaat 268
Query: 364 caaaatgtaacataaaattatcatagatttaaagggtttacttttattacttttaggtgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaaatgtaacataaaattatcatagatttaaagggtttacttttattacttttaggtgt 208
Query: 424 gtg-----------cacacgtgcacacacacgcacacacttagaagtagagttgtccaga 472
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtgtgtgtgtgtgt-----gtgcacacacacgcacacacttagaagtagagttgtccaga 153
Query: 473 gaa 475
|||
Sbjct: 152 gaa 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_f05.g1 MSMg01no094_f05.g1 CHROMAT_FILE:
MSMg01no094_f05.g1 PHD_FILE: MSMg01no094_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
(581 letters)
>mm_chr5_152101441_152102421
Length = 981
Score = 1062 bits (549), Expect = 0.0
Identities = 573/581 (98%)
Strand = Plus / Plus
Query: 1 tttacagataacacaaaactgctgcgctgaagaccgggatgagggaaggctgggatgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagataacacaaaactgctgcgctgaagaccgggatgagggaaggctgggatgagg 260
Query: 61 gaaggctggggcagaggagtgtatgcaggcagtttccctatctgtgcttttgtggtgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggctggggcagaggagtgtatgcaggcagtttccctatctgtgcttttgtggtgctt 320
Query: 121 gactgtattgtttcatacttacaaagggctttaaacgcttctctccgccagtggatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgtattgtttcatacttacaaagggctttaaacgcttctctccgccagtggatgtga 380
Query: 181 atgctgggaatactgacttgtctgttcccttagggtattaacagattagcagagcgccca 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 381 attctgggaatactgacttgtctgtttccttagggtattaacagattagcagagggccca 440
Query: 241 tgaccccaaatctgaaattctacaagatctaaaactgctggagagatggctcactagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccccaaatctgaaattctacaagatctaaaactgctggagagatggctcactagtta 500
Query: 301 agagcactggctgcttttgaagaggaccaaagttcgattcccagcacccatacggtggct 360
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agagcactggctgcttttgaggaggaccaaagttcgattcccagcacccacacggtggct 560
Query: 361 cacaactgcctgtaataccagttccagggtatccgacgccctcttctggcctccacgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 cacaactgcctgtaataccagttccagggtatccgacgccctcttctggcctccatgagt 620
Query: 421 aagtacttcttcatgcatgccctgtacagatggcgtaggtttcagccatggtcctgaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtacttcttcatgcatgccctgtacagatggcgtaggtttcagccatggtcctgaact 680
Query: 481 gtgctgtgtgaacacagaaaacaaaaaaagcagcttcctgcttactcggaagcagtttgc 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gtgctgtgtgaacacagaaaacaaaaaaaggagcttcctgcttactcggaagcagtttgc 740
Query: 541 tactttggaccagagatataagaacttaatttgaaagaaac 581
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 tactttggaccagagatataagaacttaatttgaaaaaaac 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
