BAC Information

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BAC

Clone NameMSMg01-094I11
Chromosome5 (Build37)
Map Location 103,907,071 - 103,907,321
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I11.T7 (MSMg01no094_i11.b1)MSMg01-094I11.TJ (MSMg01no094_i11.g1)
ACCAG311676AG311677
length757772
length of high quality
(start - end)
281 (141 - 421)251 (182 - 432)
definitionCHROMAT_FILE: MSMg01no094_i11.b1 PHD_FILE: MSMg01no094_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:13 2005CHROMAT_FILE: MSMg01no094_i11.g1 PHD_FILE: MSMg01no094_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTTTNCCCNNNNNTTTTNNNNNNNNNCCCCCTTTTCCTTCCCCCCCTC
CCCCCGCCNTNNCGCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXX
TCTCGAGAGGATCCGCGGAATTCACTCTCGATCCTCTGGACTCCTCCAGG
GGACCTGGGTCATTCATGTCTGCCCTCTGCAGTGTAACCCCCTGTCTTCT
AAGCTCAGGCTAGCTCCATACCATCATGGCAGCTAGGTCATTCCCTGGTA
TTAGAATCTCGAAAATGCTGGTGTCTTCATTTGTAACTGGGTTGAACTTC
CACCAATAGCTTCTTCTGGGCTCTCTTCATGGTTCCAAACTCAACTTCTC
TGTATGACCCTTCAGTCCTGGGGCTTCAACAGCTATTCTGTCTGCACCTT
CACCAATGGCCTCTCCTGGCCCCTCATTGTCAAGCCTCAGCTGCTCCCTA
TGACCCTTCCATGCCTTCAAAACCAGTACCACCTGCCCGAATCTTAAACT
GCCAAGTTTAGCTGACAGCAGGAGATACAACTTTGGACCACAGCTTCTGT
GGGCTGACTCTGAGGAAACTCTTCCTAGAAGACTTTACCTCAGTGATACT
GGTCTCTTCTTAATCACAGCTGATCAGAACCCCCGATTCTTCTCACCGAA
TGCTCAGAAGAGTCTCTGCTTCCCTCTGAGATGTTGTAAGCCACATTTCC
AAGCTTTCCATTCTCAAAGCATTTTCCAATGCATAGTTCCAAACTTCCTT
CCATATG
TTTTTTTTTTTCCGGCCCGTTCCCTTTTCTCNTCTCTCTCCTCCTCTACA
NCCTACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGCAGCAGGAGCCTGTGGG
ATTTATGGGGGTCTACACCAATGCTATGCCAAACTTTACAGTTAAACCTG
ACAGATGTTGATACTCCTGTGAACTACAGCATTTTATGTGAATGTTTTGG
GGAACTTCATAATCTGAAGGAAGAAGAGGGAAAAGAAATTGGCTCTATGA
AGAAGGGGAGAGGGACACAGTGGAGCAAACTCATGGACTGATACCTCACT
TAATGGAACACTGAAAACGGAGTTTATGATATACTCAAATGGCGATGTCG
TTGAGCAGATCAAATCTAATTTCATTGACATACACATTGCATTATACGGC
AAACTTGTTAATTCAGATCTGACACGCCGGGGAGTCTAAATTAGCTATGA
CCATATCTTCTCATACATCATTCATGTAAGTGTAAAAATAACCTAATAAT
TCTCTCATGATCTCACATCTTGATACACTTTTGCAATGGAAAATAACTGT
GCAATAACTGCTCTGCTGATTCCTGAGAGAGGAAAGGGGTATTACCAGTA
GGAAAAAGCAAGAACTGACCCTTCTTGATAACGCTGCTGGCTTAAGTGTG
TGCGACTTTAATGTCCCACGCATTATTTCACAACCCTTTGTCCACTCAAG
CCTTCTTGATTTTATTAACTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i11.g1 MSMg01no094_i11.g1 CHROMAT_FILE:
MSMg01no094_i11.g1 PHD_FILE: MSMg01no094_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:13 2005
         (251 letters)



>mm_chr5_103906871_103907521
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactttacagttaaacctgacagatgttgatactcctgtgaactacagcattttatgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactttacagttaaacctgacagatgttgatactcctgtgaactacagcattttatgtga 260

                                                                       
Query: 61  atgttttggggaacttcataatctgaaggaagaagagggaaaagaaattggctctatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttttggggaacttcataatctgaaggaagaagagggaaaagaaattggctctatgaa 320

                                                                       
Query: 121 gaaggggagagggacacagtggagcaaactcatggactgatacctcacttaatggaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggggagagggacacagtggagcaaactcatggactgatacctcacttaatggaacac 380

                                                                       
Query: 181 tgaaaacggagtttatgatatactcaaatggcgatgtcgttgagcagatcaaatctaatt 240
           |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgaaaacggagtttatgatagacacaaatggtgatgtcgttgagcagatcaaatctaatt 440

                      
Query: 241 tcattgacata 251
           |||||||||||
Sbjct: 441 tcattgacata 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)