BAC Information

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BAC

Clone NameMSMg01-094J11
Chromosome5 (Build37)
Map Location 103,907,018 - 103,907,269
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094J11.T7 (MSMg01no094_j11.b1)MSMg01-094J11.TJ (MSMg01no094_j11.g1)
ACCAG311719AG311720
length694683
length of high quality
(start - end)
320 (25 - 344)252 (56 - 307)
definitionCHROMAT_FILE: MSMg01no094_j11.b1 PHD_FILE: MSMg01no094_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:18 2005CHROMAT_FILE: MSMg01no094_j11.g1 PHD_FILE: MSMg01no094_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCACTCTC
GATCTTCTGGGCTCCTCCAGGGGACCTGGGTCATTCATGTCTGCCCTCTG
CAGTGCACACCGCCTGTCTTCTAAGCTCAGGCTAGCTCCATACCATCATG
GCAGCTAGGTCATTCCCTGGTATTAGAATCTCGAAAATGCTGGTGTCTTC
ATTTGTAACTGGGTTGAACTTCCACCAATAGCTTCTTCTGGGCTCTCTTC
ATGGTTCCAAACTCAACTTCTCTGTATGACCCTTCAGTCCTGGGGCTTCA
ACAGCTATTCTGGCTGCACCTTCACCAATGGCCTCTCCTGGCCCCTCTTT
TTCTAGCCCCCCCTGCCCCCCTATGACCCTTCCATGCCTTCAAAACCAGT
ACCACCTGGGAGAATCATACACTGCCAAGTTTAGCTGCCAGCAGGAGATA
CAACTTTGGACCACAGCTTCTGTGGTCTGACTCTGAGGAAACTCTTCCTA
GAAGACTTTACCTCAGCGATACTGGTCTCTTCTTAATCACAGCTGATCAG
AACCCCCGATTCTTCACACCGAAGGCTCAGAAAAGTCTCTGCTTCCCTCT
GAAATGTTGTATGCCAGATTTCCAAGCTCCCAACTCTCAAAGCATTTTCT
AGGCCAAAGTTCCTAAATCCTTCCATAAACCCTCCCTAAAACAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTAGGCAGCAGGAGCCTGTGGGATTTATGGGGGTCTACACCAATG
CGATCTGAAACTTTACAGTTAAACCTGACAGATGTTGATACTCCTGTGAA
CTACAGCATTTTATGTGAATGTTTTGGGGAACTTCATAATCTGAAGGAAG
AAGAGGGAAAAGAAATTGGCTCTATGAACAAGGCGAGAGGGACACAGTGG
AGCAAACTCATGGACTGATACCTCACTTAATGGAACACTGAAAACGGAGT
TTATGATAGACACAAATGGTGATGTCGCTGAGCAGATCAAATCTAATTTC
ATTGACCTACACATTGTATTATACGGCAAACTTGTTAATTCAGATCTGAC
ATGCCGGTGAGTCTAAACTAGCTATGAACATATCTTCTCATACATCATTC
CTGTAAGTGGTAAAAATAACCTAAAAACCTCCTCATGAACCTTTCATCCT
GTGAACAATTTTGTAGGGAAAAACGGGTTATTCCCGTTCGCCCCTTCCCC
CTTTATACCTTAAATATCATCACTCCTCCCTTACCTTTTTACCCCGAATC
AACCATTCTTTGCCCCCCTTTTTATTTTCGCCCCTTTACCCCCTTCCTTT
TTTCCCTCTTCCCTTTTCTTTTTTTTCCGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_j11.g1 MSMg01no094_j11.g1 CHROMAT_FILE:
MSMg01no094_j11.g1 PHD_FILE: MSMg01no094_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:18 2005
         (252 letters)



>mm_chr5_103906818_103907469
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggcagcaggagcctgtgggatttatgggggtctacaccaatgcgatctgaaacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttaggcagcaggagcctgtgggatttatgggggtctacaccaatgcgatgtgaaacttta 260

                                                                       
Query: 61  cagttaaacctgacagatgttgatactcctgtgaactacagcattttatgtgaatgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttaaacctgacagatgttgatactcctgtgaactacagcattttatgtgaatgtttt 320

                                                                       
Query: 121 ggggaacttcataatctgaaggaagaagagggaaaagaaattggctctatgaacaaggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 321 ggggaacttcataatctgaaggaagaagagggaaaagaaattggctctatgaagaagggg 380

                                                                       
Query: 181 agagggacacagtggagcaaactcatggactgatacctcacttaatggaacactgaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagggacacagtggagcaaactcatggactgatacctcacttaatggaacactgaaaac 440

                       
Query: 241 ggagtttatgat 252
           ||||||||||||
Sbjct: 441 ggagtttatgat 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)