NNAAAANATAAATTANNTNTTTATTTTTNATATTATTAAATATTTTNNAA
TATATATATATTGGNNNGGTTNACGGGGNGGTATTGTTTGGNNGTATGAA
GAGAGAGGGTGAAGGGGGTTGAGTTGAGAAGAGGAGCAGAGAGCTGTGAA
TAATAGTGTAGAGACAGGAACTTTGTTGTGTTTTNACTATTGTAAATACG
GCCCCACACCTCGTGTCATGCAACTTAGGGTAAACAACGGCCGTATAATA
GTATATAAATAAATTGCCGTAATATAGAGACGGGCCCTGAATAAAAACAC
ACCTACCCTTCACCCTTACCACGCCACCATCCCCCATCCCACCTGTGTAG
TGCGCGTGAGTGTGGAGGCGCAGTGTGTGAAGATTAAATATATACACTAT
GTATGTGTAATTTTATAACTAACGATATAAACACACCCCACCAATGATAC
ATGTTATGATATTTTGCTCAATACTGTTATCTATTCCACTTAATTTCTTA
CGCTTTATGTTAGTATTCCGATTTTCTACTATATAATAATTATATATACA
CCCAATAAACCAAAGTATTTTGACCTTTCATCGTATCCGCTCGCCTTATT
TCCGTCGTGTACCCATTTTACCTATATTTACGTTTATTTATCCTCAGTCG
AATTATGTCTATATATGGCTTATACGATGATGAATACTGGGTTATGGCCG
GTTGTCGTACCAATGTAGTGGATGTTTGTGTATGTCATTATGATCAGAGA
GTGCGATGTATGCTCAGGTATTAATCTTTATTGAGTAGCGGTGCATACCC
ATTCCTAAATATTATATTTTAAACATCGTATCTACATCCCCCTTGTAAGT
TAATTGAGAGAGTAAACAGTCTCTACTCGCACACGTATGCGCGTAGCCTT
TACGCCGGCCTGAATACGGCGCGCATTAATGCACGGTGCAATATTCAGTA
TTTGCGGCNCTCATACGTTATTTCCCGCCTTATTTCGTCGATTTAAAGAT
TATGCATAACGTGCCAGCATACCTTAAAATATACAACCCACAGTGTATAT
GCTCAATAAGTGAATTATGTTAACATTCTTAGCACACTGAGGTATAGCGT
GCTCCCGACGTATATTATTGTATCCACACGGAATGTATATATGTGGTATG
N

CATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCATGCTCATTAGAATGACCTCCACC
AAACACACACACACACACACACACACACACACACAAATATTTATTAGTGA
TCATGACTTCTAGTAAAACCTACAATTATATGACCCTTGTGTAGTAGTAT
AACTACGTGAAAAAATTCAAAGCATAACAATTGAATTTTTTTCTCTTCAC
TAGCAGATACAGGAATCAGAGAAATAAATATACTCTTATTGATTATTCAT
TATGATATGACATTATATATATATTGTACATTTGTTATCATAATATTTAT
CTCAATAAATATTAAATTAAAAACAACAATGTTGACATCAGAGAAAATTT
GACTTTTGCAACAAGTTATTCACATATAAGTGATTAACATAATTCTGTTA
TTAATATCAAAGTATTTTCCTTATTTATGAGTGATTTTCTTTTAGGAAGA
ATAAAAGAATCACAAAACACAAGTAATCTTGAGGATTAAGTATTCAGCAA
ATGATTGACTAGATTTCACAGCTTTAGTCATGATGGCAAATGCTCAAATT
AGTTGAATCAATCATTAAATATTCATAATTCAGACAGAAATTGGGACAAA
AAGAGCAATATCTATTGGCCAGTAATATGAGAATATTTTGGAATTCAGTG

Query= MSMg01no094_p20.g1 MSMg01no094_p20.g1 CHROMAT_FILE:
MSMg01no094_p20.g1 PHD_FILE: MSMg01no094_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:52 2005
         (618 letters)



>mm_chr5_59234229_59235246
          Length = 1018

 Score = 1069 bits (553), Expect = 0.0
 Identities = 595/619 (96%), Gaps = 18/619 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgctcattagaatgacctccaccaaacacacacacacacacacacacacacacac 60
           ||||||||||||||||||||||||||||||                ||||||||||||||
Sbjct: 865 attcatgctcattagaatgacctccaccaa----------------acacacacacacac 822

                                                                       
Query: 61  acaaatatttattagtgatcatgacttctagtaaaacctacaattatatgacccttgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 821 acaaatatttattagtgatcatgacttctagtaaaacctacaattatatgacccttgtat 762

                                                                       
Query: 121 agtagtataactacgtgaaaaaattcaaagcataacaattgaatttttttctcttcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agtagtataactacgtgaaaaaattcaaagcataacaattgaatttttttctcttcacta 702

                                                                       
Query: 181 gcagatacaggaatcagagaaataaatatact-cttattgattattcattatgatatgac 239
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 701 gcagatacaggaatcagagaaataaatata-tacttattgattattcattatgatatgac 643

                                                                       
Query: 240 attatatatatattgtacatttgttatcataatatttatctcaataaatattaaattaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 attatatatatattgtacatttgttatcataatatttatctcaataaatattaaattaaa 583

                                                                       
Query: 300 aacaacaatgttgacatcagagaaaatttgacttttgcaacaagttattcacatataagt 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 582 aacaacaatgttgacatcagagaaaatttgacttttgcaaaaagttattcacatataagt 523

                                                                       
Query: 360 gattaacataattctgttattaatatcaaagtattttccttatttatgagtgattttctt 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 522 gattaacataattctgttattaatatcaaagtattttctttatttatgagtgattttctt 463

                                                                       
Query: 420 ttaggaagaataaaagaatcacaaaacacaagtaatcttgaggattaagtattcagcaaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 462 ttaggaagaataaaagaatcacaaaacacaagtaatcttgaggattaaatattcagcaaa 403

                                                                       
Query: 480 tgattgactagatttcacagctttagtcatgatggcaaatgctcaaattagttgaatcaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgattgactagatttcacagctttagtcatgatggcaaatgctcaaattagttgaatcaa 343

                                                                       
Query: 540 tcattaaatattcataattcagacagaaattgggacaaaaagagcaatatctattggcca 599
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcattaaatactcataattcagacagaaattgggacaaaaagagcaatatctattggcca 283

                              
Query: 600 gtaatatgagaatattttg 618
           |||| ||||||||||||||
Sbjct: 282 gtaaaatgagaatattttg 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)