Query= MSMg01no095_g15.b1 MSMg01no095_g15.b1 CHROMAT_FILE:
MSMg01no095_g15.b1 PHD_FILE: MSMg01no095_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:25 2005
(220 letters)
>mm_chr5_42146182_42146802
Length = 621
Score = 381 bits (197), Expect = e-110
Identities = 215/221 (97%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 1 gcttcctaatcctgcgggggagggaaggcagagggagtctggataaaagctttccggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttcctaatcctgcgggggagggaaggcagagggagtctggataaaagctttccggtga 260
Query: 61 aggtctgagaatctgctccttggaggagatcccaaatccttcaaaaagaaacaatgctcc 120
||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aggcctgaggatctgctctttggaggagaccccaaatccttcaaaaagaaacaatgctcc 320
Query: 121 tcccccaaataaaaaccaaaattgctcagtaagggctggaggatttttttttttttt-gg 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tcccccaaataaaaaccaaagttgctcagtaagggctggaggatttttttttttttttgg 380
Query: 180 ttttgtttgttaatagatacttagaaaagagaagctagtta 220
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtttgttaatagatacttagaaaagagaagctagtta 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 621
Length adjustment: 9
Effective length of query: 211
Effective length of database: 612
Effective search space: 129132
Effective search space used: 129132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no095_g15.g1 MSMg01no095_g15.g1 CHROMAT_FILE:
MSMg01no095_g15.g1 PHD_FILE: MSMg01no095_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:25 2005
(290 letters)
>mm_chr5_42217047_42217736
Length = 690
Score = 509 bits (263), Expect = e-148
Identities = 283/291 (97%), Gaps = 4/291 (1%)
Strand = Plus / Minus
Query: 1 tggcacagccagggctatagacagagactctatctccccccccccacactttttactttt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 tggcacagccagggctatagacagagactctatct---cccccccacactttttactttt 427
Query: 61 tattttattt-ttttttaaaaagggtccttttcacttaatctttgcagtttgatgggttg 119
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tattttatttatttttttaaaagggtccttttcacttaatctttgcagtttgatgggttg 367
Query: 120 tgaatttctgtgttaacaatcatcttttgcacagacatctctgttgaggtctgggaacta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaatttctgtgttaacaatcatcttttgcacagacatctctgttgaggtctgggaacta 307
Query: 180 tttatatatttcggtaggtgtacaaatagccctagaacccttgagctcactctgatcctt 239
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 306 tttgtatatttcggtaggtgtacaaatagccctggaacccttgagctcactctgatcctt 247
Query: 240 ctgcctcagcctctccagtactggaattattgtgtgccatcatacctggct 290
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctgcctcagcctttccagtactggaattattgtgtgccatcatacctggct 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
