Query= MSMg01no095_l04.b1 MSMg01no095_l04.b1 CHROMAT_FILE:
MSMg01no095_l04.b1 PHD_FILE: MSMg01no095_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:48 2005
(645 letters)
>mm_chr5_60757366_60758411
Length = 1046
Score = 1143 bits (591), Expect = 0.0
Identities = 633/651 (97%), Gaps = 10/651 (1%)
Strand = Plus / Plus
Query: 5 gaattca-tatttatttataacactcaatgtaaaacaggtctactagttcagtgctccca 63
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcaatatttgtttataacactcaatgtaaaacaggtctactagttcagtgctccca 255
Query: 64 ctgaaatgtactttaataaccagcacaaacagagtggttcacaatggtcactaacacctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgaaatgtactttaataaccagcacaaacagagtggttcacaatggtcactaacacctg 315
Query: 124 ttctagagaattcaaaacacagttcagactctatagctactatacatacatgtagcacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttctagagaattcaaaacacagttcagactctatagctactatacatacatgtagcacag 375
Query: 184 atacatagaggtaaaacaat-t-------tatatatatatatatatatatatatatatat 235
|||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 376 atacatagaggtaaaacaatatatatatatatatatatatatatatatatatatatatat 435
Query: 236 acaagtcattgcaaagattagtaattccattgccttaataaaacaggggtgtggagataa 295
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acaagtaattgcaaagattaataattccattgccttaataaaacaggggtgtggagataa 495
Query: 296 tctccaaatactctccctaaacagcagtcacataccatagaatcaaaagtcatccagcaa 355
||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||
Sbjct: 496 tctccaaatactctccctaaagagcagtctcatatcatagaatcgaaagtcatccagcaa 555
Query: 356 g-aaaatatccaaaccatatgttttattaaaccaattacaatatgcagagcacaacaaag 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcaaaatatccaaaccatatgttttattaaaccaattacaatatgcagagcacaacaaag 615
Query: 415 aggaattgcagtaataaattattccactgagtaaaacctagatctattttagtatggcca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aggaattgcagtaataaattattccactgagtaaaacctagatctattttagtatggcca 675
Query: 475 atatttatatgttaccccttacttcattacacaaatgtctcctgtggatagtacagttac 534
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atatttatatgttacctcttacttcattacacaaatgtctcctgtggatagtacagttac 735
Query: 535 aaagtttagtattgtggtctgattgaaggatttcaaaagtaaaatatagtctgagcacat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaagtttagtattgtggtctgattgaaggatttcaaaagtaaaatatagtctgagcacat 795
Query: 595 tttccatactagtgcattcagaaaaattgcatctacaagagactgtatctt 645
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tttccatactagtgcattcagaaaaattgcatctacaagagactgtatctt 846
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 426 tatatatatatatatatatatatatatatata 395
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 428 tatatatatatatatatatatatatatatata 397
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 430 tatatatatatatatatatatatatatatata 399
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 432 tatatatatatatatatatatatatatatata 401
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 434 tatatatatatatatatatatatatatatata 403
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatata 236
||||||||||||||||||||||||||||||||
Sbjct: 436 tatatatatatatatatatatatatatatata 405
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 205 tatatatatatatatatatatatatatatat 235
|||||||||||||||||||||||||||||||
Sbjct: 424 tatatatatatatatatatatatatatatat 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_l04.g1 MSMg01no095_l04.g1 CHROMAT_FILE:
MSMg01no095_l04.g1 PHD_FILE: MSMg01no095_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:48 2005
(619 letters)
>mm_chr5_60821466_60822489
Length = 1024
Score = 1168 bits (604), Expect = 0.0
Identities = 617/624 (98%), Gaps = 5/624 (0%)
Strand = Plus / Minus
Query: 1 ttttcgtcaggtgtggctgcagttagggtaaaatagattgactcaaaactgatcataact 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 824 ttttcgtcaggtgtggctgcagttagggtaaaatagattgactcaaaaatgatcataact 765
Query: 61 tgaaccttgaaaccctttcttcctataatgtaaattccaatggtttttacttgattaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgaaccttgaaaccctttcttcctataatgtaaattccaatggtttttacttgattaact 705
Query: 121 tcggatcaccactaacttcagtatttaataagttaacccaggtaactaagttaactaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcggatcaccactaacttcagtatttaataagttaacccaggtaactaagttaactaaat 645
Query: 181 agcagcactgtctccagatcaaatcaacatatacaatctctgatcctaactaactgtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agcagcactgtctccagatcaaatcaacatatacaatctctgatcctaactaactgtcat 585
Query: 241 agaagtgaactatttccagtagagcacagcttttatttactgtagtccagcatctgcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agaagtgaactatttccagtagagcacagcttttatttactgtagtccagcatctgcaat 525
Query: 301 atctacccacttcaaaaaacagcagagccatgttcatactgaacagaatatttttgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atctacccacttcaaaaaacagcagagccatgttcatactgaacagaatatttttgaatt 465
Query: 361 gcttttggtatataagccatcactcctttatgctactggtttatgatttcataaatcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcttttggtatataagccatcactcctttatgctactggtttatgatttcataaatcttg 405
Query: 421 ttacatgagaggcaataggagtgtttactgaaacaagtgttcctttatccttatgctttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttacatgagaggcaataggagtgtttactgaaacaagtgttcctttatccttatgctttg 345
Query: 481 catgaaatatgatagatttctgaaaaaaaatgtttactttgttctcacagttatgttagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catgaaatatgatagatttctgaaaaaaaatgtttactttgttctcacagttatgttagc 285
Query: 541 tcatgaaattttgaaattatgttctaaaaaaa-----aaccctatggtttgctatctgta 595
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 284 tcatgaaattttgaaattatgttctaaaaaaaaaaacaaccctatggttttctatctgta 225
Query: 596 ttaccttaaagacaatgttttatg 619
||||||||||||||||||||||||
Sbjct: 224 ttaccttaaagacaatgttttatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1024
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1014
Effective search space: 617526
Effective search space used: 617526
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
