CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCACCAGAAGTTCTT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATAAGTGACTTCCTGAGTAATCAAC
TGTTGGGAATTATCAGAAATGCTTTGAAGTTCAGCTAGGAACCAAGTACA
AGTACATGTGTCTACATGCTCACAGGATCGTATATATATATATATATATA
TACAATCCCAGAGTTATAATTTACCAGAAGAAAAAAGAAGTATCCTTCAA
GAAAAAATTACATCCATAAGGACTGGAAAGGCTGGAATATGATTGAACAA
TCGTTAGTATGAAAGTACATGCTGAAATAGATTAATATTTTGGCACTGAC
TTTTAAAATTCATCAAAATTGAGCTTTTAAATTAGGACAATCAACATTCC
GTCTTTCAGATTATGGTATGGCTAGATTATGGTATGGTATAGTACCATGC
TCTCTGCTCTAGAGTTATACTTGTATGGTGTTTTACATCAAGCATCCTGT
GGAGTAGTTCCTTCCTCACCTGTCACACCAGAATACAAACCACTTGAGGT
CAGCACTTCTGGCTCCTTCTTGGTCATGGTTTCTCTGTATATCCCACATA
GACCATCAGTGATCACTTGTAGTGTGTCAGGAAGGAAACTGAGGCACAGC
AACTTATAAGCCAATGGTATGGGACAGCAGATGAGTAGCAGAAGCAGA

Query= MSMg01no095_o06.g1 MSMg01no095_o06.g1 CHROMAT_FILE:
MSMg01no095_o06.g1 PHD_FILE: MSMg01no095_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:03 2005
         (625 letters)



>mm_chr5_72301802_72302830
          Length = 1029

 Score = 1083 bits (560), Expect = 0.0
 Identities = 608/634 (95%), Gaps = 19/634 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcataagtgacttcctgagtaatcaactgttgggaattatcagaaatgctttgaagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataagtgacttcctgagtaatcaactgttgggaattatcagaaatgctttgaagttca 260

                                                                       
Query: 61  gctaggaaccaagtaca----agtacatgtgtctacatgctcacaggatcgtatatatat 116
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gctaggaaccaagtacatccaagtacatgtgtctacatgctcacaggatcgtatatacat 320

                                                                       
Query: 117 atatatatatatacaatcccagagttataatttaccagaagaaaaaagaagtatccttca 176
           |||          | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ata----------cgatcccagagttataatttaccagaagaaaaaagaagtatccttca 370

                                                                       
Query: 177 agaaaaaa-ttacatccataaggactggaaaggctggaatatgattgaacaatcgttagt 235
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agaaaaaaattacatccataaggactggaaaggctggaatatgattgaacaatcgttagt 430

                                                                       
Query: 236 atgaaagtacatgctgaaatagattaatattttggcactgacttttaaaattcatcaaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgaaagtacatgctgaaatagattaatattttggcactgacttttaaaattcatcaaaa 490

                                                                       
Query: 296 ttgagcttttaaattaggacaatcaacattccgtctttcagattatggtatggctagatt 355
           |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 491 ttgaacttttaaattagaacaatcaacatttcgtctttcagattatggtatggctagatt 550

                                                                       
Query: 356 atggtatggtatagtaccatgctctctgctctagagttatacttgtatggtgttttacat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atggtatggtatagtaccatgctctctgctctagagttatacttgtatggtgttttacat 610

                                                                       
Query: 416 caagcatcctgtggagtagttccttcctcacctgtcacaccagaatacaaaccacttgag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caagcatcctgtggagtagttccttcctcacctgtcacaccagaatacaaaccacttgag 670

                                                                       
Query: 476 gtcagcacttctggctccttcttggtcatggtttctctgt----atatcccacatagacc 531
           ||||||||||||||||| |||||| |||||||||||||||    ||||||||||||||||
Sbjct: 671 gtcagcacttctggctctttcttgctcatggtttctctgtttgtatatcccacatagacc 730

                                                                       
Query: 532 atcagtgatcacttgtagtgtgtcaggaaggaaactgaggcacagcaacttataagccaa 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atcagtgatcacttgtagtgtgtcaggaaggaaactgaggcacagcaacttataagccaa 790

                                             
Query: 592 tggtatgggacagcagatgagtagcagaagcaga 625
           ||||||||||||||||||||||||||||||||||
Sbjct: 791 tggtatgggacagcagatgagtagcagaagcaga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1029
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1019
Effective search space:   626685
Effective search space used:   626685
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)