BAC Information

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BAC

Clone NameMSMg01-095O20
Chromosome5 (Build37)
Map Location 52,049,643 - 52,049,937
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O20.T7 (MSMg01no095_o20.b1)MSMg01-095O20.TJ (MSMg01no095_o20.g1)
ACCAG312726AG312727
length691949
length of high quality
(start - end)
295 (370 - 664)---
definitionCHROMAT_FILE: MSMg01no095_o20.b1 PHD_FILE: MSMg01no095_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005CHROMAT_FILE: MSMg01no095_o20.g1 PHD_FILE: MSMg01no095_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CACGATGGTTCTGAAGAGAAACTCACATCATCAGACTTGGTGGCAAGTGA
CTTTTGACTGAGTCATTTCACCCATTCTAAATGCTATTAATGTTCTTACT
AGCTTCTAGAATGGGTGACTTTTAACATCACTTCTCATCCCTTAAAAAAA
TTATTATGTACACAGAGGTGGAAATTTTGTTCTCTTGTTTGTTGTTTGTT
TTAGTGGCTTTAATTTGTTTATTAATTTATTTACATCCCAAATGCTGCCT
CCCCTATTGTTTCCCGCTTCACAGAGTTCCTCTCTCATGACACACCGGTG
TGAGGTTTTACCCAGCGGAGCCCTCCACTCTCAGACCCTTTTGGGTGTTA
AGGACAGGCAGAATGGAGCCAATTTTCTTCTAGTATCAGGGGATGGCGAA
GCTAATTTGACATCTAGGGTCACAATTAAACATCAGCGATGTTTAGTTAA
AAAGAAGATGGGATGAAGAGCTCCTAATGCTTTGGAAAGAGCACAGCATG
CAAATTAGGTATTGTGCAGTTGAAAGAAGGAGCTGTTTGGTCACAGGCCC
TTCAGACATCGAGGAGGAGTCTGTGGCCTTCCTTCTGTGTGAGCACAGAG
AGGACAAGAGCAGCAGAGGGCGGAGGGAGAGCTGAGAACAA
TTTTTTTTTTTNTNNNNTNNTTTTTTTTTTTCTTTTNNNNNNCNGCTTCT
CTGNTTCTCTTGGACTTCTGGAANNNCCTCGCGGGANNNNTTGTGCTCAC
TGGGGTTTCCTGGGGAANNNNNTTTTTCCAATTCGGGGGGGGGGGGNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCCTCCCCGGGGGGGGGGAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNGGGGGGGGGGGGGGGGGGN
NNNNNTTTTTTTTTTTTCCCCCCCCCCNNNNAAAAGGGGGGGGGGGGGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNN
NNANNATGATTTTTTTTTTAAATATATAANAATTAAGGGGGGGGGAAAGG
GGAGGGTGTTTTTTTTTTTTTCTCCCCCCCCCCCCCCCCGCCGGGAGGGG
GAGGGAGGAGTTGGGGNGGGGGGGGNGGGCGGGGGCCGCGAAAAAAAAAA
AAAAACAATTCTATTTGGGGGGGGGGGGGGGGGGGGTGTTTTTCTCTCTC
TCTTTTTTCCCTTTTCTCCTCCTCTTTTCTCCGCCCTCCTTTTTCCTTCC
TTCTTCTCCCCTCTTTTCTCCCTCGCTTCTCCCCTCCCCCTCTTCTTTCT
CTTCTCCTTCCTTTTCTGTCTTTCTTTTTGTCCCGTCCCTTCCCCCCCCC
CCTTCCCCCCCCCCTCTTTTTCTTTTCCGCTCCGTTCGTTCTGCCTCTGT
TTTCTCTTGCCGCTTCTTTTCTTTTCCCGCCTGCTTCCGCCCTCCCCCTA
CTCCTTTTTCTTCTTTTTTCTCTCTCCTGTTTTTCCTCTTTCTCCCTCCC
CCCTCCCCCTCCTTCCTCTCTCCCCCTTCTTCTTCCTCTTTTCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o20.b1 MSMg01no095_o20.b1 CHROMAT_FILE:
MSMg01no095_o20.b1 PHD_FILE: MSMg01no095_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:06 2005
         (295 letters)



>mm_chr5_52049443_52050137
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccctccactctcagacccttttgggtgttaaggacaggcagaatggagccaattttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gccctccactctcagacccttttgggtgttaaggacaggcagaatggagccaattttctt 436

                                                                       
Query: 61  ctagtatcaggggatggcgaagctaatttgacatctagggtcacaattaaacatcagcga 120
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 435 ctagtatcaggggatggcgaagctaatttgacatctaggatcacaattaaacatcagcaa 376

                                                                       
Query: 121 tgtttagttaaaaagaagatgggatgaagagctcctaatgctttggaaagagcacagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtttagttaaaaagaagatgggatgaagagctcctaatgctttggaaagagcacagcat 316

                                                                       
Query: 181 gcaaattaggtattgtgcagttgaaagaaggagctgtttggtcacaggcccttcagacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcaaattaggtattgtgcagttgaaagaaggagctgtttggtcacaggcccttcagacat 256

                                                                  
Query: 241 cgaggaggagtctgtggccttccttctgtgtgagcacagagaggacaagagcagc 295
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 255 cgaggaggagtctgtggccttccttctgtgtaagcacagagaggacaagagcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)