Query= MSMg01no096_d02.b1 MSMg01no096_d02.b1 CHROMAT_FILE:
MSMg01no096_d02.b1 PHD_FILE: MSMg01no096_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:27 2005
(604 letters)
>mm_chr5_61658363_61659366
Length = 1004
Score = 1075 bits (556), Expect = 0.0
Identities = 589/602 (97%), Gaps = 5/602 (0%)
Strand = Plus / Minus
Query: 6 gaattcctaaactttttctataagtgatgaaagttttagctcaggaacttcttagccata 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattcctaaactttttatataagtgatgaaagttttagctcaggaacttcttagccata 785
Query: 66 catctaaagtccatggtaactc---aagaaagcacaatgattagttatgtagcacttaat 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 784 catctaaagtccatggtaactcaagaagaaagcacaatgattagttatgtagcacttaat 725
Query: 123 tgtaagccatgaaacactaaatatcatgactattgcattgacctaccaggtagtatttat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgtaagccatgaaacactaaatatcatgactattgcattgacctaccaggtagtatttat 665
Query: 183 atacttatataatgtgaatatatacaaatataatttaaatatatcatatatatataacat 242
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 664 atacttatataatgtgaatatatacaaatataatttaaatatatc--atatatataacat 607
Query: 243 acaaacaggtatataacaatgtaaacacaaggtcataaatttgaaggagaaaatggaagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaaacaggtatataacaatgtaaacacaaggtcataaatttgaaggagaaaatggaagt 547
Query: 303 gtatatggatgaatgaaagaacaaaaggaaagagggaaacgatgtatcaatattaaaatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtatatggatgaatgaaagaacaaaaggaaagagggaaacgatgtatcaatattaaaatt 487
Query: 363 gcatgcacaaaataaataacgtatagggatattctgagcttttgtccccgccgacaagaa 422
||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 486 gcaggcacaaaataaataacgtatagggatatcccgagcttttgtccccgccgacaagaa 427
Query: 423 cacactcaggacaacctgaatcttctgcggcaaagcttttattgcttatttatcaggagg 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 426 cacactcaggacaacctgaatcttctgcggcaaagcttttattgcttacttatcaggagg 367
Query: 483 gaagacccccaaaccgggaaaatggcgctgcttatatagcccacagcgtgacatttcagc 542
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaagacccccgaaccgggaaaatggcgctgcttatatagcccacagcgtgacatttcagc 307
Query: 543 acctgatgtggcgtgacagctcctgattcgttgctcgcccatcaccccattactatgctg 602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 306 acctgatgtggtgtgacagctcctgattcgttgctcgcccatcaccccattactacgctg 247
Query: 603 ca 604
||
Sbjct: 246 ca 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_d02.g1 MSMg01no096_d02.g1 CHROMAT_FILE:
MSMg01no096_d02.g1 PHD_FILE: MSMg01no096_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:27 2005
(295 letters)
>mm_chr5_61537471_61538165
Length = 695
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Plus
Query: 1 acactgaattgaaatctatgagaactgcaagataatgaatatatttactttaaagacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactgaattgaaatctatgagaactgcaagataatgaatatatttactttaaagacatt 260
Query: 61 gtgtggtactaattatagatctattaataaaacccattgctctataatttatgtagccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtggtactaattatagatctattaataaaacccattgctctataatttatgtagccct 320
Query: 121 accttgtgatctgatacaatataaaatataaccaattgaataattgccttgtggatttag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgtgatctgatacaatctaaaatataaccaattgaataattgccttgtggatttag 380
Query: 181 gctactatagtagggaaaatcaagtgatagatgcagaaacaacaccttcagcaactatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctactatagtagggaaaatcaagtgatagatgcagaaacaacaccttcagcaactatga 440
Query: 241 ccttatgtaagatgacaaaattctagctatggagatattcaagcaatgtca 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttatgtaagatgacaaaattctagctatggagatattcaagcaatgtca 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
