BAC Information

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BAC

Clone NameMSMg01-096E23
Chromosome5 (Build37)
Map Location 8,843,800 - 8,844,036
singlet/doubletsinglet
Overlap geneAbcb1b
Upstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031
Downstream geneAbcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096E23.T7 (MSMg01no096_e23.b1)MSMg01-096E23.TJ (MSMg01no096_e23.g1)
ACCAG313017AG313018
length768800
length of high quality
(start - end)
230 (120 - 349)190 (194 - 383)
definitionCHROMAT_FILE: MSMg01no096_e23.b1 PHD_FILE: MSMg01no096_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005CHROMAT_FILE: MSMg01no096_e23.g1 PHD_FILE: MSMg01no096_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTTTTTTCTTTCCTCTCTTCCTCCTCTTTCCTCCTTAAACCCTCTC
TAAATTGGGCGCTAAAGAATCATACAGTCATAACGCGCGGATTCCAATAC
CTTCCCCAAAAACGGTTTATTAGTATAGAAGAATCATATCTCAACATACA
AATGATTGTACCCCGCAAATATAATAGCTAATACAGATAGCTAATATATA
AATATATAATAGTATACAAATATATAATAGGTGATAATATAATAATGGAA
AAAAACAAGATGTTTCTTAAAAATCAGGAGTAAAATAAGGATAACTAATA
TATTACTGTTCAATTTTAGCTATAGAGATCACACCTGAAAAAAATATAGG
AAAGAAGCGTATTTATTTTAAATAGGGAAGAATTGAAATCCTGCTTTCCA
CATATATTGACCACACCCACACTTTGCTGAAAGACCAGAACTGGCGAATT
TACTAGAGAAGCATTTACGACAACAAGATATGTTGCAAATATAAGTATCA
GTTCTTCACAGCAACCAAAACTTCACAGAGACAAATTAGGAGTCCCATTC
CTAATAGATACCACCTAGTCCCTAATACCTCTGATTCTTACGAATTTTAA
CGCTGTAGTGAAAATTACTGAAACAAGTTCAAGACTGCATCCGGAAAAAC
AGTCTGCCTGTGTCCATGCCATCCGGCGAAATGATATTCCAAAGCCATAT
TACCTCCACTAATTTTGCAAATTAATTTTCCGTAGCCTTGACACCATACG
GATGGCCGGGTTCCACTC
CCCCNNNNNNNNNTTTTNNTTTCCCCCTTATTCCTCCCTTCTCCCCTCCT
CTCTCNCCCGATGATATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCCAATCTGGAGTCTCTAGCTATATT
GCAAAATCCTGTGTCTAAAAGTAAGAGATCCTGACTAACTAAAACAGCTT
TGAAAAGGAAAACAAGTTTGGTGGGCTCAGACAAACTGTGTTGGATAAGG
CTAGGCACATGGGTGAATCCAATACAACAGAGAGTTCATACACAGACTCT
AACATTTGAGATGTTGATTTTTGACAAATGGACCAAAGGTATCACTGGGC
AAAGAAAAGTATCAGGTAGTCCTGGGACAAATGCAATTCCTCACACAAAA
TGGATTTGTACCATGATTTTACACACACACACACACACACACACACACAC
ACCCACACACACACATCACACACACATTTATAAACTAAGGGCAAAAAAAG
CCTATAAAACTCTTTAGATGACATAATACTTGGCTAGATAAATCATCACA
AAAATTTTTTTACCGACGGATTACTTGGACCACTCTTGAATTACAAAGCC
TATACCTATACAGGCCTGCTCCTAGTTACTTTTCTATTGCTGTGAAAATA
TCCCCTGGCCACGGGAATTTTATACTATTAACAGTTTATTTGGAGCTTAC
AGATTTAGAGGGTTATATAACCTGATCTTTATGGCGTGACATTTGTGCTT
ACGTATTTATGTCACTCCCTTGACCCCCATTCTGAGACCTCACCCCCTGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_e23.b1 MSMg01no096_e23.b1 CHROMAT_FILE:
MSMg01no096_e23.b1 PHD_FILE: MSMg01no096_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
         (230 letters)



>mm_chr5_8843607_8844236
          Length = 630

 Score =  391 bits (202), Expect = e-113
 Identities = 226/238 (94%), Gaps = 9/238 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtatagaagaatcatatctcaacatacaaatgattgtaccccgcaaatataatagct 60
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 194 ttagtatagaagaatcatatctcaacatacaaatgattgtacaaggcaaatataatagct 253

                                                                       
Query: 61  aatacagata-------gctaatatataaatatataatagtatacaaatatataataggt 113
           ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatacagatacctaatagctaatatataaatatataatagtatacaaatatataataggt 313

                                                                       
Query: 114 gataatataataatggaaaaaaacaagatgtttcttaaaaatcaggagtaaaataaggat 173
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 314 gataatataataatggaaaaaa-caagatgtttcttaaaaatcaggagtaaaataaggat 372

                                                                     
Query: 174 aactaatatattactgttcaattttagctatagagatcacacctga-aaaaaatatag 230
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 373 aactaatatattactgttcaattttagctatagagatcacacctgagaaaaaatatag 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)