BAC Information

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BAC

Clone NameMSMg01-096F08
Chromosome5 (Build37)
Map Location 134,179,763 - 134,180,210
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F08.T7 (MSMg01no096_f08.b1)MSMg01-096F08.TJ (MSMg01no096_f08.g1)
ACCAG313035AG313036
length793767
length of high quality
(start - end)
281 (112 - 392)458 (131 - 588)
definitionCHROMAT_FILE: MSMg01no096_f08.b1 PHD_FILE: MSMg01no096_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005CHROMAT_FILE: MSMg01no096_f08.g1 PHD_FILE: MSMg01no096_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTTTGTNTTTTCCNCTTCCCACTCTCCCATCACCCCCGCCCGCC
GCTCCCCCCCCGCCCACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCAGCCCATGCCGTGCTATGTGTTGATTTG
TGTCACCCTTTCTCACAGGATGGCATCTTAGTCTGTGTTCTATTGCTGTG
AAGAGGCACCATGACCAAGGCAACTCTCGTGAAAGAAAGCATTGAATTAG
GAGCTTGCTTACAGTTTTTAAGGTTTAGTCTGTTATCATCATTGTAGGGA
GCATGGAGGCATGAAAGCATGGTGCCAAAAAAGCAGTTCAGAGCTAAATC
CTAATCCATAGTGTGGGGGGGAAGGAGGGAGAGAGAATGAAATGTTACCC
CTTCCTTCTCTCTTCATCCCGTTTCCTTCCCTTATCCCTGCCCTCTCCCC
TCTTTATCACCTTTTGTCCCATCTTCTCCCTCATTACCTCCCCTCTCCCC
TCTCTCTATTACTTTTAACCCCCCCTGTTTCCTCGCAACTTTTATCTTTC
ATCTCCTCATTCTTCTACCTTCCCCCCTTTTTCTAACCTTCTTATTTCCT
CTCCCCTTCCCCCATTTACCTCCTTTCTTTCCTTTTACACTCCTCCTTTC
CATTCTATTTTCTTCTTTTCATTTTCTTTCTGCCCCCTTCACTTACCGAT
CTCTATTTCAATCCTCTTCTCTATCTTCCTTACTCCCCCATCTCGCACTT
TAACTTTTTCCTCCCCTTTGCCCTCTTCCATCCCCTTCCCTTC
NATTTTTTTTTTTTTTTTTTTTTTTTTCTTTCCTTCCCCCCTCCCTTCCC
CCCCCCCCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCCAGATGTCTGTATT
TCAAAGCAGGAAATCTAAACATAATAAGCCTCTTTAAGTTGCATGTAGTG
TGACCTGGGCCTGTAGTTCCATACATTTGGACAGAAGGGATTGATATCAG
AAGTTCAAGGACTCCATTGGGTGAATTAAGTAAGGACAGCTTGACCAACT
AGTAAGACCTTATCTCAAAGTAAAGAATGAAAAAGGGTTACAACTATGAA
TCAGTGGTAGAGTGCTTGTCTGAAATCTGTCAGTGAAGGGCTAAGGGTGT
GGCACAGTGGTGAAGAATTTACTAGAATCCCCGAGTAAGGGGGATTGGCT
GAAGCTAAATGGTGGAGCCCTAGCCTACCATGCGTGAGGCCCTGGGTTCA
ATCCCCAGTGCAACACAACCATAGTAATCAAAACAAGCCCCTTTAAACTA
GTGCTGAAGTCTAGTTTATTTCTCCCTTTATATGGAACACAGCATCTGCT
TAATGAAAACCCAGCATATGTTAAGAAATATGGTATACACGATGTATAAG
GAAGCTTGCCTATAATTCATGTGAGTGGAACCAGGTGTTTTTAAACAATG
CCTATTGTGCTAATAATCTTTTTACTAGTCATTCCGGAAACCCCCACTCG
GCGAATTTACCTACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f08.g1 MSMg01no096_f08.g1 CHROMAT_FILE:
MSMg01no096_f08.g1 PHD_FILE: MSMg01no096_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:39 2005
         (458 letters)



>mm_chr5_134179558_134180410
          Length = 853

 Score =  758 bits (392), Expect = 0.0
 Identities = 436/454 (96%), Gaps = 7/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ccagatgtctgtatttcaaagcaggaaatctaaacataataagcctctttaagttgcatg 65
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 206 ccagatatctgtatttcaaagcaggaaatctaaacataataagcctctttaagttgcata 265

                                                                       
Query: 66  tagtgtgacctgggcctgtagttccatacatttggacagaagggattgatatcagaagtt 125
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 tagtgtgacccgggcctgtagttccatacatttggacagaagggatggatatcagaagtt 325

                                                                       
Query: 126 caaggactccattgggtgaattaagtaaggacagcttgaccaactagtaagaccttatct 185
           ||||||||| |||||||||| ||||||| |||| |||||      |||||||||||||||
Sbjct: 326 caaggactctattgggtgaactaagtaaagacaccttga------agtaagaccttatct 379

                                                                       
Query: 186 caaagtaaagaatgaaaaa-gggttacaactatgaatcagtggtagagtgcttgtctgaa 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaagtaaagaatgaaaaaagggttacaactatgaatcagtggtagagtgcttgtctgaa 439

                                                                       
Query: 245 atctgtcagtgaagggctaagggtgtggcacagtggtgaagaatttactagaatccccga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctgtcagtgaagggctaagggtgtggcacagtggtgaagaatttactagaatccccga 499

                                                                       
Query: 305 gtaagggggattggctgaagctaaatggtggagccctagcctaccatgcgtgaggccctg 364
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 500 gtaagggggattggctgaagctaaatggtggaggcctagcctagcatgcgtgaggccctg 559

                                                                       
Query: 365 ggttcaatccccagtgcaacacaaccatagtaatcaaaacaagcccctttaaactagtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 560 ggttcaatccccagtgcaacacaaccatagtaatcaaaacaagcccctttaaactagtgt 619

                                             
Query: 425 tgaagtctagtttatttctccctttatatggaac 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaagtctagtttatttctccctttatatggaac 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 853
Length adjustment: 10
Effective length of query: 448
Effective length of database: 843
Effective search space:   377664
Effective search space used:   377664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)