TCTTTTTTTTTTTTTTTTTCTTCTTTTTNTCCTCCTCCTTCNCCTTCTCA
CCCGACCATTTCTATAATTGCGGCGCTAAACGACTCACTATATTCAGAGA
TCCGCGGAATTCATACAGCTGCCCTTAAATTCAGAACAGCTCTCCAACCT
TAGCCTCTGATGTACTGGGATTAGAGGTATATGATATCATGCCCAAATGG
AAACACTTCATGACCCCACAGACCTAAAGAAACTTGTATGCACGCTGCCA
TTCTAGATATTTTTCTTGTTTACAAGGCCAGCAAGTGTTCAATTAAAAAG
TGGGAAATTTGAGGGGGAGTTCAGTTTCTCCGTGCCTGCCCAGCAACCAG
CTCCTCCCAGTACATCCTGGTCACTCTTGGGCAGTGGGAGATCCTAAATA
AAGAAGATGTTCCCAGAATCCATATCCAGTGTCTCACACAACATAGAGTG
TCCCAGCATGAGGCAGTATGAATCAGGCAGTATGATTCAGGATTCATATT
AGTTAACAGATGTCATTGACCTTGCTTCACTGTTATCCTTCATCCCAAGG
AGGATAGTCTGTCTTGTTTGAGGCAAATAATTTCAGGAAGTAGATGCTGC
AGGATAGACACATAGCCCCTTAAGGCTCCAACAATTTCTTCATTTATTAG
CCCCTTACCCATCCCTACATAAGACTTGCCACCAGCTTTTATTTCTGTCA
GACCCCTCAGTTTCTGCTGGAGAGAGATGGCCTTTACCTTTGTGCATTAC
TAATCACAGTCC

CCCCCTCCTCCTTNTTCCCTCCCNTCTCCCCCCCCTTNTCCTCCACACCC
CNTCCCTCGAGCTAGGGGTAGGCCGGGGGNCGCCGGTTTCCGATCCGNNN
GAANNANAGAAGGTTCCCAGAGAGGGGGGNNNAGNGCGGNANNNNANNNA
ANNNAAAAGGGNNANNNAGNNCCACCAAGNCGAGCGACGGGAGCCCGNGG
CACACGCCGGACANNAGCCCGCGAGGGGACNCAGAACGGGGCAAGAGCGG
CCCCCAACAGGCCGGNGGCCAGAAGGCCGGACAGACGGGGACCAGGGCCA
CACAGAGCNCAGCAACACAGCGAGGACACACNGGGCAACACCCGACGACA
CAGCACAAGCCACCGGCGCTTTTTTTTTTAACACAGCCCCAGGGCACAGA
CGACAACAGGAAAATGCACCCCCCCCCCAACCCACGAGAAACCACCACAG
ACCAGGCAGACAGCCAAGACCCCAAACGCAAGAGACAGCAGACGCCGGCG
GGGACACGGAGAAAGAGGAACACCACACCAACGCCGGAGAACAGCACGCG
GCACAACAACCCGGGAAACGAGACCGGCAGAGCCACCGAACAGGGGACAC
AGGACGACCCGAGAACCCCGCCGGACCCGGCAGGGGCGCACAACCGGAAA
AGGCGCCGCCACGGGACAAGGACCCGGGGGCCCCGGAAGGGCGGGAGCGG
CACCAGCCAAAAGAGCCTTTAGCGGGGAAAAACCCCGACGAACCCCACCC
GGAAACCCGGAG

Query= MSMg01no096_g20.b1 MSMg01no096_g20.b1 CHROMAT_FILE:
MSMg01no096_g20.b1 PHD_FILE: MSMg01no096_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:46 2005
         (486 letters)



>mm_chr5_12495897_12496782
          Length = 886

 Score =  866 bits (448), Expect = 0.0
 Identities = 475/484 (98%), Gaps = 3/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattc-atacagctgcccttaaattcagaacagctctccaaccttagcctctgatgta 63
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 776 ggaattcaatacagctgcccttaaattcagaacagctctccagccttagcctctgatgta 717

                                                                       
Query: 64  ctgggattagaggtatatgatatcatgcccaaatggaaacacttcatgaccccacagacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctgggattagaggtatatgatatcatgcccaaatggaaacacttcatgaccccacagacc 657

                                                                       
Query: 124 taaaga-aacttgtatgcacgctgccattctagatatttttcttgtttacaaggccagca 182
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taaa-ataacttgtatgcacgctgccattctagatatttttcttgtttacaaggccagca 598

                                                                       
Query: 183 agtgttcaattaaaaagtgggaaatttgagggggagttcagtttctccgtgcctgcccag 242
           ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct: 597 agtgttcaattaaaaagtgggaaatttgaggcgaagttcagtttctccgtgcctgcgcag 538

                                                                       
Query: 243 caaccagctcctcccagtacatcctggtcactcttgggcagtgggagatcctaaataaag 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caatcagctcctcccagtacatcctggtcactcttgggcagtgggagatcctaaataaag 478

                                                                       
Query: 303 aagatgttcccagaatccatatccagtgtctcacacaacatagagtgtcccagcatgagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagatgttcccagaatccatatccagtgtctcacacaacatagagtgtcccagcatgagg 418

                                                                       
Query: 363 cagtatgaatcaggcagtatgattcaggattcatattagttaacagatgtcattgacctt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagtatgaatcaggcagtatgattcaggattcatattagttaacagatgtcattgacctt 358

                                                                       
Query: 423 gcttcactgttatccttcatcccaaggaggatagtctgtcttgtttgaggcaaataattt 482
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gcttcactgttatctttcatcccaaggaggatagtctgtcttgtttgaggcaaataattt 298

               
Query: 483 cagg 486
           ||||
Sbjct: 297 cagg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)