BAC Information

Click to search

BAC

Clone NameMSMg01-096K19
Chromosome5 (Build37)
Map Location 12,428,453 - 12,428,843
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K19.T7 (MSMg01no096_k19.b1)MSMg01-096K19.TJ (MSMg01no096_k19.g1)
ACCAG313296AG313297
length679777
length of high quality
(start - end)
390 (49 - 438)412 (128 - 539)
definitionCHROMAT_FILE: MSMg01no096_k19.b1 PHD_FILE: MSMg01no096_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:06 2005CHROMAT_FILE: MSMg01no096_k19.g1 PHD_FILE: MSMg01no096_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCATAGGTCAGAACTCGGCGGAATTCCAGTGTAAATTCCCAAAACTC
TATTCTTGTGCCTTCTCTGGAACTTTTTTCCTTCAATTTTAGTTGTTGCT
GTTGCTTTCTTATCCAACTTCAATGTGATAGTTCCTGTTTTATCTAATTA
TACTTTATTTTGTAATATTTTTAAATGTGTAAATGAATAAACAAAAAACT
ATTTCCAAGGCTAAAGGTTAACAAGTGAAGTGTAACTTATATCTACTGGG
ATATTGAAAATCATAGTTCTACAATGGAGTCATCCTGAATATATTAACCA
CTTCAAGGCAGGACTCATGTTCAGAAGCTGTTAACACCATTTAGTGCACT
CACAGTGTTTTGTGTGCTGTTATTTTGCTACTGTTTTCAGGAGGGGAGGG
ATTTGTTTTATTTTGGTATGTATATAGGTGTGAGAGTTCATTCACTTCCC
CCCCCCCTTCCCCTCTTCCCCCCTTTCCCTTTCTCTCCATCCTTCGCTCC
ACATCTCCTTCCTTCCACCTTCGCCTTTTTGCTCTTTCCCTACACATTCC
CTTCTTTATCCCCTTCTCCCTCTTCCATCCTCCTTTCCTCCTTTTTCTTT
CTTTCTTCTTGCACTTACTTCCCTCTCTTCTTCCTTTTTTTTCTATCTTT
TTCACCCCTACCATTTCTCCCTCCCCTCT
TTTTCTTTTTTTTTTTTTTTTCTTTTTTTTCCTTCTCTNCTCCCCTCTGT
CCCNNNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCCAATTCTCAGCTGAGGAATCTTGAA
TAGCCAAGAAGCATCTTAAGAAATGTTCAACATCCATAGTCATCACGGAC
ATGAAAATCAAACGACCCTGAGATTCCATCTCATACCATCCAGAATGGCT
AAGGTCAAAAACTGAGGAGACAGCAGACTCTGGCTAGGATGTAGAGAAAG
AACACTTCTCCACTGATGGTGGGATTGCAAGCTGGTAAAACCACTCTGGA
AATCAGTCTGGGGATTCCTCAGAAAATTGGACATAGTATTCTCTAAGGAC
CCAGCTATACCACTCTTGACATATACCCAGAAGATGCTCCAACATTTAAC
AAGGACACATGCTCCACTATGTTCACAGCAGCCTTATTTATAATTCACAG
AAGGTAGAAAGAACCCAGATGTCCCTCAACTGAGGAATGGATACCGAAAA
TGTGGTACATTTACACAATGGAGGACTACTCAGCTATTGAACACAATGAT
TTTCATGAAATTCTTAGCGCAATGGATGGAACTAGAAAATATTATCCTGA
GTGAGGTAACCTAACCTCCAAAGAGTACTCATGGTATACCTTCCCTGAAA
TGTGGATTTTAGATCGGAAACTTGGAACACCAATGATTACATTCATAGAC
CACCCGAACTTTCCCGAATAGGGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k19.b1 MSMg01no096_k19.b1 CHROMAT_FILE:
MSMg01no096_k19.b1 PHD_FILE: MSMg01no096_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:06 2005
         (390 letters)



>mm_chr5_12428254_12429043
          Length = 790

 Score =  694 bits (359), Expect = 0.0
 Identities = 383/391 (97%), Gaps = 1/391 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattcttgtgccttctctggaac-ttttttccttcaattttagttgttgctgttgctt 59
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct: 200 tctattcttgtgccttctctggaactttttttcattcaattttagttgttgttgttgctt 259

                                                                       
Query: 60  tcttatccaacttcaatgtgatagttcctgttttatctaattatactttattttgtaata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcttatccaacttcaatgtgatagttcctgttttatctaattatactttattttgtaata 319

                                                                       
Query: 120 tttttaaatgtgtaaatgaataaacaaaaaactatttccaaggctaaaggttaacaagtg 179
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 tttttaaatgtgtaaatgaataaacaaaaagctatttccaaggctaaaggttaacaagtg 379

                                                                       
Query: 180 aagtgtaacttatatctactgggatattgaaaatcatagttctacaatggagtcatcctg 239
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 aattgtaacttatatctactgggagattgaaaatcatagttctacaatggagtcatcctg 439

                                                                       
Query: 240 aatatattaaccacttcaaggcaggactcatgttcagaagctgttaacaccatttagtgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 aatatattaaccacttcaaggcaggactcatgttcagaagctgttaacaccatttagtgg 499

                                                                       
Query: 300 actcacagtgttttgtgtgctgttattttgctactgttttcaggaggggagggatttgtt 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 actcacagtgttttgtgtgctgttattttgctactgttttcgggaggggagggatttgtt 559

                                          
Query: 360 ttattttggtatgtatataggtgtgagagtt 390
           |||||||||||||||||||||||||||||||
Sbjct: 560 ttattttggtatgtatataggtgtgagagtt 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)