BAC Information

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BAC

Clone NameMSMg01-096O01
Chromosome5 (Build37)
Map Location 56,238,109 - 56,238,543
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096O01.T7 (MSMg01no096_o01.b1)MSMg01-096O01.TJ (MSMg01no096_o01.g1)
ACCAG313449AG313450
length706711
length of high quality
(start - end)
432 (64 - 495)448 (70 - 517)
definitionCHROMAT_FILE: MSMg01no096_o01.b1 PHD_FILE: MSMg01no096_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:24 2005CHROMAT_FILE: MSMg01no096_o01.g1 PHD_FILE: MSMg01no096_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAA
TTCCAGATTTACCACATTTTAAATCACATCCAAAATATGATTTGGTGTTT
GTGGCAAAAAAAAAAAAAAGTTTTGTAATCTTTCAAACTTGTAATGTCTA
GGGATGAATATCTGTCCCCTGCTGAACAAGCAACCCAATGGTATATTAGT
GATGGCAGAATTCCCATTACACTGTCCCAAGAATATGAAGGCAAGACCAA
TTCTGGCTGTTTGCATTCTCTTAGCTTCTAAAGTCTGTTTTATGTCCATG
AGCTACATTATATTACCTTCTTAAGTTTGATTTCTATTTGTACTGAGCAA
ATCTTAATGACAGACAGAATGGTACCTAGCTGTCAGGATATTAGAGACAA
TTCTTATTTTAGTTTCAATTATTTTGACAGTCCACAAATAGTATATAGCT
GTTACTCTCACACAGCACAATTTATAACATAACCTTTTATAACAGTAGCA
AGAATGCACAAAATATTCAGTGTCTACCATGCAACATTTTCTTTATATAC
CGTATGTTAGTCTGACATAAATTGTTTTGAGGTGTCTCTTTTTCTTGGGG
CCAGATTCTTCAATCTCCAGCTCTAACAACTTCAATGCATGTGTCTACGG
GTGAAAAACAAGTGCTGGAAAAAAAAAAAATATTGAATCCCCAATGGAGG
TTGTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGCCCATACATAAACATGATAAAAGCAAT
CTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAG
AAATCCCACTAAAATCAGGGACTAGACAAAGCTGCCCATTTTCTCCCTAC
CTCTTCAACATAGTACTTGAAGTCCTAGCCAAAGAAATTAGAGAACAAAA
GGAGACCAAGAAGATACAAATTGGATAGGAGGAACTCAAAATATCACTTT
TTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGA
GAACTCCTAAACCTGATAAACTGCTTCAATGAAGTATCAATATAAAATAC
CTTGGCATGACTCTAACTAAGGAAGTATAAGACCTGTATGATAAGAACTT
CAAATCTCTGAAGAAAGAAATTACTGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCTTGGATTAGCAGGATCCATATAGTACAAATGGCTATTTTG
CCAAAAGAAATCTACTTATTCAATGCAATCCCCATCGAATTTCCAACTCA
ATTCCTCAACGAATAATAAAGGGCAATCTGCAAATTCCTCTGGGAATAAC
AATAAAACCCAGGATAGCTAAAACTCTTCCCACGGATACAAGATCCTCTG
GTGGATTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_o01.b1 MSMg01no096_o01.b1 CHROMAT_FILE:
MSMg01no096_o01.b1 PHD_FILE: MSMg01no096_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:24 2005
         (432 letters)



>mm_chr5_56237909_56238743
          Length = 835

 Score =  791 bits (409), Expect = 0.0
 Identities = 428/435 (98%), Gaps = 3/435 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattttaaatcacatccaaaatatgatttggtgtttgtggcaaaaaaaaaa--aaaa-g 57
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |
Sbjct: 635 acattttaaatcacatccaaaatatgatttggtgtttgtggcaaaaaaaaaaacaaaatg 576

                                                                       
Query: 58  ttttgtaatctttcaaacttgtaatgtctagggatgaatatctgtcccctgctgaacaag 117
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 ttttgtaatctttcaaacttgtaatgtctagggatgaatatatgtcccctgctgaacaag 516

                                                                       
Query: 118 caacccaatggtatattagtgatggcagaattcccattacactgtcccaagaatatgaag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caacccaatggtatattagtgatggcagaattcccattacactgtcccaagaatatgaag 456

                                                                       
Query: 178 gcaagaccaattctggctgtttgcattctcttagcttctaaagtctgttttatgtccatg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcaagaccaattctggctgtttgcattctcttagcttctaaagtctgttttatgtccatg 396

                                                                       
Query: 238 agctacattatattaccttcttaagtttgatttctatttgtactgagcaaatcttaatga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agctacattatattaccttcttaagtttgatttctatttgtactgagcaaatcttaatga 336

                                                                       
Query: 298 cagacagaatggtacctagctgtcaggatattagagacaattcttattttagtttcaatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagacagaatggtacctagctgtcaggatattagagacaattcttattttagtttcaatt 276

                                                                       
Query: 358 attttgacagtccacaaatagtatatagctgttactctcacacagcacaatttataacat 417
           |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 275 attttgacagtccaaaaatagtctatagctgttactctcacacagcacaatttaaaacat 216

                          
Query: 418 aaccttttataacag 432
           |||||||||||||||
Sbjct: 215 aaccttttataacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 835
Length adjustment: 9
Effective length of query: 423
Effective length of database: 826
Effective search space:   349398
Effective search space used:   349398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)