Query= MSMg01no096_o14.b1 MSMg01no096_o14.b1 CHROMAT_FILE:
MSMg01no096_o14.b1 PHD_FILE: MSMg01no096_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:27 2005
(603 letters)
>mm_chr5_70863592_70864595
Length = 1004
Score = 1009 bits (522), Expect = 0.0
Identities = 568/596 (95%), Gaps = 23/596 (3%)
Strand = Plus / Plus
Query: 10 tcagtctcagactcagga-atatactgctgtcctgctcttacatgtcactttccctactc 68
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcagtctcagact-aggacatatactgctgtcctgctcttacatgtcactttccctactc 268
Query: 69 ataatgaacgtgtttcaacctgcattgctatattgtcttaaatttttaaattaggggtgg 128
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataatgaacatgtttcaacctgcattgctatattgtcttaaatttttaaattaggggtgg 328
Query: 129 caaatttgacaacctccttcaatttttggaagccacaaaaagccagatgctctgatggat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaatttgacaacctccttcaatttttggaagccacaaaaagccagatgctctgatggat 388
Query: 189 catttctgtcccagaattcttatggtaagatgggaggtggagacaggagaatgattcaga 248
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catttctgtcccagaatgcttatggtaagatgggaggtggagacaggagaatgattcaga 448
Query: 249 aaactgtcaaacagctagtttgcaaatgcagctagttagcttgtcccacacatggaaagc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaactgtcaaacagctagtttgcaaatgcagctagttagcttgtcccacacatggaaagc 508
Query: 309 tctgacagagatggatggatgactggctagcataaaagaaaaaa-gatgcttttaagcag 367
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 509 tctgacagagatggatggatgactggttagcataaaagaaaaaaagatgcttttaagcag 568
Query: 368 tttgtaggaatttgtgatctgtaacaattttgcagctgtcatgtcaaaatgatcaaatca 427
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttgtaggaatgtgtgatctgtaacaattttgcagctgtcatgtcaaaatgatcaaatca 628
Query: 428 aacactgaaatgtatatgccttatcacataagaattgtaaaatgaccttttaaatcatat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aacactgaaatgtatatgccttatcacataagaattgtaaaatgaccttttaaatcatat 688
Query: 488 atatgtatatatatatatatatatataatttaagatagcacgatggactaagaagatgat 547
|||| |||||||||||||||| |||||||||||||||||||
Sbjct: 689 atat--------------------ataatttaagatagcatgatggactaagaagatgat 728
Query: 548 ggctctactcaattttcctaaacatgttccaatataaatatggcttgaaagtaaca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggctctactcaattttcctaaacatgttccaatataaatatggcttgaaagtaaca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_o14.g1 MSMg01no096_o14.g1 CHROMAT_FILE:
MSMg01no096_o14.g1 PHD_FILE: MSMg01no096_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:27 2005
(601 letters)
>mm_chr5_70917024_70918025
Length = 1002
Score = 1133 bits (586), Expect = 0.0
Identities = 598/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Minus
Query: 1 acagacataactgtacatgtatataaatactttgtgtgcagtgatctgatccttgttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 acagacataactgtacatgtatataaatactttgtgtgcagtgatctgatccttgttctg 905
Query: 61 tgattattattaaaggttccaataattgtatgtacctattaagaaaacattaattagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tgattattattaaaggttccaataattgtatgtacctattaagaaaacattaattagtca 845
Query: 121 caagtatacaaaaagatgttatatattataaaaaataattaagcctttacagtgaagcag 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 844 caagtatacaaaaagatgttatatattatgaaaaataattaagcctttacagtgaagcag 785
Query: 181 acatattaatattcaagacatatagtattgacaggataacagaaaatcagtgtttaca-a 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 784 acatattaatattcaagacatatagtattgacaggataacagaaaatcagtgtttacaga 725
Query: 240 tgaaacaactcaatgttgacacatttatggatatgcataggattggcaaaaattgtgaac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 724 tgaaacaactcaatgttgacacatttatggatatgcataggattggcaaaaattgtgagc 665
Query: 300 aacatgtcatagcatataaaatctttattgtcctgagcttcagatggctgagtcaaaaat 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 664 aacatgtcatagcatataaaatctttattgtcctgagcttcagatggttgagtcaaaaat 605
Query: 360 aatataatagaacagtaaaaatatttacttatacttttttatttgcagtgataaatgaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aatataatagaacagtaaaaatatttacttatacttttttatttgcagtgataaatgaaa 545
Query: 420 aatattatctagggcaatgtactttctagaaagataaactattataccaagaaaaatatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aatattatctagggcaatgtactttctagaaagataaactattataccaagaaaaatatg 485
Query: 480 cttgacttttctaggatgtgcctgttattttaaagccaaggccattacttcatactaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttgacttttctaggatgtgcctgttattttaaagccaaggccattacttcatactaatt 425
Query: 540 caagagctgacattcatgagctatgtgacaatagattctttccttttcttaacatgttca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caagagctgacattcatgagctatgtgacaatagattctttccttttcttaacatgttca 365
Query: 600 ac 601
||
Sbjct: 364 ac 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
