BAC Information

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BAC

Clone NameMSMg01-097A22
Chromosome5 (Build37)
Map Location 48,680,881 - 48,681,167
singlet/doubletsinglet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A22.T7 (MSMg01no097_a22.b1)MSMg01-097A22.TJ (MSMg01no097_a22.g1)
ACCAG313585AG313586
length7121,262
length of high quality
(start - end)
291 (62 - 352)---
definitionCHROMAT_FILE: MSMg01no097_a22.b1 PHD_FILE: MSMg01no097_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:39 2005CHROMAT_FILE: MSMg01no097_a22.g1 PHD_FILE: MSMg01no097_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAATACACTCCTATATCCAGAGATCCGCGGAATTCTATTTATT
TACCTTTACAGTGAAGAGAATACTGATATGGACCTTTTAAAAGGTTTACA
AAATTAATGATCTCATTGTCTTTGTTTGTTAGGGGGGTATTGTATCCCAG
GACCAAAAGAGACGATGTCTGGCTGGAAAATAGTCAACATTTAAGTTAAC
ATTTCATGCTGTCTTTTCTAGTATGCGATGCACTGTGGCTGATTTTTTAA
GAATGCTGTAGCTATATATTCTTTTACAGTTGAAGCCTGACGGACAACCA
ACACTTGAACTGTAAAGACTAGCTGAGTTGTCATTGATTTGGCCATCCTT
TTTTTTTCACCTCCCTCCGCGCCCAGGTGCAATGCTCAGTATCCTCTGGG
GTCATGATAAGGATTGAAAAACCTCATTCTACCACTCCCTGACGTGACGC
TACCATTGATGACTCCCAAAAGTAGCCATTGAGCCACCTAACTTTGCCCA
CTTCAAATGGGAACATACATTCTATTTCTTACCATTACCATATAATTTAG
GCCCACTCCCCTCTTCTATTACCTGAGTATTATTTAAATTTCCGCCCTCA
ACCCGGTTCTAAGAAAACCATGCCTTTTTTCCACCTGCGTGCTTTACTAT
CTGAACACCGCTCCTACATTTGAAGCTCACACCAAATCTGTACCTCCTTT
TCTTTTTGTCCC
CAACCCCGCCANCAAAACCCCACAAAACCTTGACCCATCACTTCCCCNGG
TTCACACAATCCCCCCCCCACCCATCTTCTCTTTCCTCTTCTCACCTCTA
TTATTCGTGCTCTCCTCTTTTTCTACAATACCCCTCCTTAATTATCCTCT
TATCTTTCCTATCTTTTACATTTCTCGTCTCATGACTGACCGCTCACGCC
GTACACACAACGTCGTGTCTCTTTTATATAAACTTATATGTTAACCGCGG
GAGGGTCAAATTTTTTTCGAGAGTGCGGTGAGACGTGGCGCGAGCACATT
TCTGTTTCTTTTTTAGATTCATGTTTCTATGCCGGTCGTTGACGTCGACA
GTTGAGCAGGTGGTCGCGTGGTTCGACGATAGAGATATTCTTTGTCCTGT
AGCGCGATCGCTATTTTCCTGTGTGGACATATAATATTTGTATATCATTA
TCGTATACTTAATAAACCGGATGTGAGACAGCTGTCTGTGTTTTGGCCTT
ATCCCCTATAATATATACCCATTATATATATCTGACGTAAGAAGACGCGT
TTGATATTGGAATTTTTATGAACCCAAACCGTACCCTTCTACCCCTCCGC
AGCTTTGTGTGTATATACAATTCTTAACATCTCTATCCACACGATTAAAT
CGTATTCCACTACGAGTCGTCCCCTACACATATTTGTCGCTTTAATTAAT
CCTAAATACGTGCGGGCGCATGTATAGCGCGATGTTGATACTCATTAAGA
TATGTGGCGGAGATGGATATATAGACTGGTGCTAAGTCGAAGTACGGCGA
GACGTGTAAGACACACTAATCTGGAACTCATAATACGCGTGGGGCTTAGT
AAGCACACGCGCGTCCGCCGGAGCGGTAGTGCCGAGTGATCGCAATTGAC
GTTGAAGATTGTTATCTCTAATGTCCGCGCAACATCAATATTGATACGCA
GTGCTCGCAAGATGTTCGCTTTTAACCAGTGTACGCGGNTCCTACATATT
ATTAGTAAGTAACATACGAATAACTAGACGATGACTTATGAGCGCGCTAT
ACCGTGTGATGTTTTGAAATAATAAATTACAATCGACGCCCACTGAGCAA
TATACGCGCGCCCATAGCGAGGAGGAGACAGAAGGCGAGGAGTCGGGNAG
CGTGTGAGACGAGAAGTATCGATATATAAATATAATTGAGACATGTGAGG
TAGCGTGAGGTCCGCGCGTCGCACGAATATAAGAACGTCATGTCGCGCAC
AGTGTAGTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a22.b1 MSMg01no097_a22.b1 CHROMAT_FILE:
MSMg01no097_a22.b1 PHD_FILE: MSMg01no097_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:39 2005
         (291 letters)



>mm_chr5_48680681_48681371
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagagaatactgatatggaccttttaaaaggtttacaaaattaatgatctcattgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaagagaatactgatatggaccttttaaaaggtttacaaaattaatgatctcattgtct 428

                                                                       
Query: 61  ttgtttgttaggggggtattgtatcccaggaccaaaagagacgatgtctggctggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgtttgttaggggggtattgtatcccaggaccaaaagagacgatgtctggctggaaaat 368

                                                                       
Query: 121 agtcaacatttaagttaacatttcatgctgtcttttctagtatgcgatgcactgtggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtcaacatttaagttaacatttcatgctgtcttttctagtatgcgatgcactgtggctg 308

                                                                       
Query: 181 attttttaagaatgctgtagctatatattcttttacagttgaagcctgacggacaaccaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 attttttaagaatgttgtagctatatattcttttacagttgaagcctgatggacaaccaa 248

                                                          
Query: 241 cacttgaactgtaaagactagctgagttgtcattgatttggccatcc 287
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 cacttgaactgtaaaggctagctgagttgtcattgatttggccatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)