Query= MSMg01no097_c15.b1 MSMg01no097_c15.b1 CHROMAT_FILE:
MSMg01no097_c15.b1 PHD_FILE: MSMg01no097_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:48 2005
(225 letters)
>mm_chr5_90079504_90080128
Length = 625
Score = 337 bits (174), Expect = 4e-97
Identities = 212/226 (93%), Gaps = 5/226 (2%)
Strand = Plus / Minus
Query: 1 catgaatatagcagctgtagtcaccctaagtgagatttcctgactcattctgatttgaag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catgaatatagcaactgtagtcaccctaagtgagatttcctgactcattctgatttgaag 270
Query: 61 tccttgaccagtgattttattttcttacctccaagattcttctgtaatttttcatgaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccttgaccagtgattttattttcttacctccaagattcttctgtaatttttcatgaagg 210
Query: 121 cagataaatagatgctttgttttgttttgttttgttttgttttgttttgttttgttttgt 180
||||||||| |||||||||||||||||||||||| |||| |||| |||| |||| ||||
Sbjct: 209 cagataaattgatgctttgttttgttttgttttgctttgctttgctttgctttgctttgc 150
Query: 181 tttgttttg-ttt--ttt--tttgctttgctttgctttgctttgtt 221
|||| |||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 149 tttgctttgctttgctttgctttgctttgctttgctttgctttgtt 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_c15.g1 MSMg01no097_c15.g1 CHROMAT_FILE:
MSMg01no097_c15.g1 PHD_FILE: MSMg01no097_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:48 2005
(454 letters)
>mm_chr5_89910188_89911040
Length = 853
Score = 820 bits (424), Expect = 0.0
Identities = 445/454 (98%), Gaps = 5/454 (1%)
Strand = Plus / Plus
Query: 1 tatggctattcattagtctttttgagaacttcacagataatccaattcctggagagagga 60
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 201 tatggctattcattagtctttttgagagcttcacagataatccagttcctggagagagga 260
Query: 61 tatttggttaccaaggtttagtagtttcagcaacatatctgtgtgatttatatactcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttggttaccaaggtttagtagtttcagcaacatatctgtgtgatttatatactcccc 320
Query: 121 tgcacagagatttcagtaagaatctcaaaaaagtttttttgttgttgtttttgtttgttt 180
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 321 tgcacagagatttcagtaagaatctcaaaaaa-attttttgttgttgtt----tttgttt 375
Query: 181 gtttgtttgtttgtttgttttgtcgactagacaaagaaagtgccaatgttatttacgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtttgtttgtttgtttgttttgtcgactagacaaagaaagtgccaatgttatttacgtgt 435
Query: 241 gtttgaatttgagcacttttggttattttcctctctatattgttaagaaattattcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtttgaatttgagcacttttggttattttcctctctatattgttaagaaattattcctca 495
Query: 301 aggcagttcacttttatcagacacaccaagcacaaatctgagtcagagagaggcattctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggcagttcacttttatcagacacaccaagcacaaatctgagtcagagagaggcattctg 555
Query: 361 agaaaagctggactagttaaaagaatgtggctaacacagaatttcagagcaagagtggat 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 agaaaagctggactagttaaaagaatgtggttaacacagaatttcagagcaagagtggat 615
Query: 421 atttgatgtatactgtgggtcagatgatcatcca 454
||||||||||||||||||||||||||||||||||
Sbjct: 616 atttgatgtatactgtgggtcagatgatcatcca 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space: 374292
Effective search space used: 374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
