BAC Information

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BAC

Clone NameMSMg01-097F14
Chromosome5 (Build37)
Map Location 47,719,973 - 47,854,559
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097F14.T7 (MSMg01no097_f14.b1)MSMg01-097F14.TJ (MSMg01no097_f14.g1)
ACCAG313801AG313802
length690687
length of high quality
(start - end)
275 (40 - 314)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no097_f14.b1 PHD_FILE: MSMg01no097_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:03 2005CHROMAT_FILE: MSMg01no097_f14.g1 PHD_FILE: MSMg01no097_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,854,290 - 47,854,559)(47,719,973 - 47,720,215)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
ATAGTATGCTCTCTAGGGGGTCCAAGAATGTATGCACACAAATTATATTC
CATTATATTAAACTAAGCACCAACTATTGAACCACTGAGTGATCTGAAAA
TACATGTATTTGGGTTTTGCCTGCAGCCAAATATTTTAAGAAGAAAAGCT
TTTGACTTGTAGGAAGCCAATGAGATATTATTTTAGGCATCTTCTCAGAG
ACTTCTTTTTCTGTTGAAAAAACACTTTAATCAAACCCTTTGGGCCAACT
TGTAATACATCACCATTATTTTTATTTACAAAATATTTATCCTCTCTCTA
ACCATTTTTTTATTCCCAGTCTNTTCCGAATGAGCTCTATTGCCTTGCAT
TAACTCTACACAGGGATTTATGCCACTGTGACAAATAGGAGGATGTGACT
GCTAGCAATTGAATGCCAAGGGTGCCTAAAATAACCCAAATAATCAAGAT
TTCACAGTAAAACTATTGCCAATGGTTCCTGGCCTTATTCTGCTACTCGG
GCAGATAGCACATGTTGAATACTTTTTCGAGCTTTTGTTCATACATTGTG
ACATATTGCCTTCTTTTTCTAACTCAAGTCATTGCATTTTCTTTCCAGGC
CATTTTTACTTATCATGAACAGGAACTACATGTTAATATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTCCACTAACCTGTCACATAGCTTTT
AATGACTTGCTTTGGTGTGCAGGATGCTCAAGGCAAAAACTAAGCAGGAA
GGGAAGGAATGGGAAAGTTACTATATTAGGGTTATTATGAATTTTCTTGT
TACATTTCTCTAAAATTAACCTTTGGTCCAAGGGGTACAGGCAAGCATTA
TCACTTCATGTTTATTTATATCTACAGATCCAATAGATTAATACACCAAC
TAATTTCAAAAGTAAAATATTTTCTGGAAAGAACACCTCTATTCCCTTGC
CAAACAAAATTCCATTAACTAACTGAAATTAGACTTAATAACAATCACAT
AAACCAATTAGTTTCAATTTATAACTCCATTAGGAATATTATTCATCAGG
ACTCTGCCAGATAGGGCTGTACTTCTTCAGACATTCAAGAGATTAAATAA
ATATAACCTGGGGTGCTAATTACATGATGATGACACAGATCCCACAAAAT
GACTTCCCTTCCTATGCAGAGACTTTTGTGTGATGTGATTTTTTCCCTGT
TTTTAGAAAAATGTCCTTGCTCTAAACCTTGTGTTCTGCCATTTTGATGT
GTGTGTGTGTGTGTGTGCGCGCCTTCCCCCCCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_f14.b1 MSMg01no097_f14.b1 CHROMAT_FILE:
MSMg01no097_f14.b1 PHD_FILE: MSMg01no097_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:03 2005
         (275 letters)



>mm_chr5_47854085_47854759
          Length = 675

 Score =  429 bits (222), Expect = e-125
 Identities = 258/270 (95%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatagtatgctctctagggggtccaagaatgtatgcacacaaattatattccatt 65
           |||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 475 gaattcatggtaggctctctaggggatcctagaatgtatgcacacaaattatattccatt 416

                                                                       
Query: 66  atattaaactaagcaccaactattgaaccactgagtgatctgaaaatacatgtatttggg 125
           ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 415 atattaaactaagtagcaactattgaaccactgagtgatttgaaaatacatgtatttggg 356

                                                                       
Query: 126 ttttgcctgcagccaaatattttaagaagaaaagcttttgacttgtaggaagccaatgag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttttgcctgcagccaaatattttaagaagaaaagcttttgacttgtaggaagccaatgag 296

                                                                       
Query: 186 atattattttaggcatcttctcagagacttctttttctgttgaaaaaacactttaatcaa 245
           |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 atattattttagacattttctcagagatttctttttctgttgaaaaaacactttaatcaa 236

                                         
Query: 246 accctttgggccaacttgtaatacatcacc 275
            |||| ||||||||||||||||||||||||
Sbjct: 235 gccctgtgggccaacttgtaatacatcacc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no097_f14.g1 MSMg01no097_f14.g1 CHROMAT_FILE:
MSMg01no097_f14.g1 PHD_FILE: MSMg01no097_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:03 2005
         (243 letters)



>mm_chr5_47719773_47720415
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactccactaacctgtcacatagcttttaatgacttgctttggtgtgcaggatgctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactccactaacctgtcacatagcttttaatgacttgctttggtgtgcaggatgctcaag 260

                                                                       
Query: 61  gcaaaaactaagcaggaagggaaggaatgggaaagttactatattagggttattatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaaactaagcaggaagggaaggaatgggaaagttactatattagggttattatgaat 320

                                                                       
Query: 121 tttcttgttacatttctctaaaattaacctttggtccaaggggtacaggcaagcattatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttgttacatttctctaaaattaacctttggtccaaggggtacaggcaagcattatc 380

                                                                       
Query: 181 acttcatgtttatttatatctacagatccaatagattaatacaccaactaatttcaaaag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 acttcatgtttatttatatctacagatccaatagagtaatacaccaactaatttcaaaag 440

              
Query: 241 taa 243
           |||
Sbjct: 441 taa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)