BAC Information

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BAC

Clone NameMSMg01-097F20
Chromosome5 (Build37)
Map Location 13,461,095 - 13,461,668
singlet/doubletsinglet
Overlap geneSema3a
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097F20.T7 (MSMg01no097_f20.b1)MSMg01-097F20.TJ (MSMg01no097_f20.g1)
ACCAG313813AG313814
length694688
length of high quality
(start - end)
318 (45 - 362)573 (71 - 643)
definitionCHROMAT_FILE: MSMg01no097_f20.b1 PHD_FILE: MSMg01no097_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:04 2005CHROMAT_FILE: MSMg01no097_f20.g1 PHD_FILE: MSMg01no097_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCTATCCCTATACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGAACTAGACAAGGCTGCGCACTTTCTCCCTACCTATTCAACATTGTA
CTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGTGGAT
ACAAATTGGAAAAGAAGAAGTCAAAATATCACTATTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCTACCAGAGATCTCCTAAACCTG
ATAAATAGCTTCTATGACGCACCCGCACACAAAATTAACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAAAAATTAGGG
AAACAACACAGTTCTCAATAGTCACGAATAATATAAAATACTTTGGCGTG
ACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAGGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATGTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCTATCAAAATTCCAACTCAAAC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGAATCTGCTCCTTTTGGTTCCTCTCAG
ATGGTTGAAATTTTGATTTCCAATGATGCTCAAAATATTTCTAGCAGTCA
TACGGTTGCCATTTGGTTTTATTGAAACAGTGCAAAGAGAGATGGGTTAG
TAGGATAAACAAAGAGGATTCAGAGAGCTATTGATTCAAAACAGATTCTT
TTACCAGCTTAGCACAAATTCATTTTGCATTTGCAAACCATGGTCAAGGA
AGCTAAGCCACCAGAAAAAAATGTACTGAGAATAACTCAGGGGGATTTAG
AGCCTTGGGAACATGAGCAAGGGAGAGTAGAGGGCAATCAAAATGCGCAG
ATCATATTTTACTTTTGTCATCAAATTACCTTTCTAATATAAAATACATA
TTTTCCAGCATTTCTCTAGCAAGTAGATAGTAAAGGTGATAAGCACTTCA
TACATCTAACGAAATACCACAGAGATTCTAAATTTAACACGGACACATCA
AGCAAAGAGTGTATTAATTAACAAGACAGCATGCTTTATAAACTGATTCA
TTTTTTTCACAACAAAAAATACCCCTCAGATTAATTTTGTTAGAGACGTC
TTTTACTAGCAGATGAAAGGCAACATATCCCACTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_f20.g1 MSMg01no097_f20.g1 CHROMAT_FILE:
MSMg01no097_f20.g1 PHD_FILE: MSMg01no097_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:04 2005
         (573 letters)



>mm_chr5_13460895_13461868
          Length = 974

 Score = 1019 bits (527), Expect = 0.0
 Identities = 563/575 (97%), Gaps = 3/575 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaatctgctccttttggttcctctcagatggttgaaattttgatttccaatgatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgagaatctgctccttttggttcctctcagatggttgaaattttgatttccaatgatgct 715

                                                                       
Query: 61  caaaatatttctagcagtcatacggttgccatttggttttattgaaacagtgcaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caaaatatttctagcagtcatacggttgccatttggttttattgaaacagtgcaaagaga 655

                                                                       
Query: 121 gatgggttagtaggataaacaaagaggattcagagagctattgattcaaaacagattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gatgggttagtaggataaacaaagaggattcagagagctattgattcaaaacagattctt 595

                                                                       
Query: 181 ttaccagcttagcacaaattcattttgcatttgcaaaccatggtcaaggaagctaagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttaccagcttagcacaaattcattttgcatttgcaaaccatggtcaaggaagctaagcca 535

                                                                       
Query: 241 ccagaaaaaaatgtactgagaataactcagggggatttagagccttgggaacatgagcaa 300
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 534 ccag-aaaaaatgtactgagaataactcagggggatttagagccttgggaacatcagcaa 476

                                                                       
Query: 301 gggagagtagagggcaatcaaaatgcgcagatcatattttacttttgtcatcaaattacc 360
           |||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||
Sbjct: 475 gggagagtagagggcagtcaaaatgtacagatcatattttatttttgtcatcaaattacc 416

                                                                       
Query: 361 tttctaatataaaatacatattttccagcatttctctagcaagtagatagtaaaggtgat 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 415 tttctaatataaaatacatattttccagcatgtctctagcaagtagatagtaaaggtgat 356

                                                                       
Query: 421 aagcacttcatacatctaacg-aaataccacagagattctaaatttaacacggacacatc 479
           ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 355 aagcacttcatacatctaacgaaaataccagagagattctaaatttaacactgacacatc 296

                                                                       
Query: 480 aagcaaagagtgtattaattaacaagacagcatgctttataaactgattca-tttttttc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 295 aagcaaagagtgtattaattaacaagacagcatgctttataaactgattcattttttttc 236

                                              
Query: 539 acaacaaaaaatacccctcagattaattttgttag 573
           ||||||||||||||||||||||||||| |||||||
Sbjct: 235 acaacaaaaaatacccctcagattaatgttgttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)