BAC Information

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BAC

Clone NameMSMg01-097H02
Chromosome5 (Build37)
Map Location 55,949,888 - 55,950,523
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097H02.T7 (MSMg01no097_h02.b1)MSMg01-097H02.TJ (MSMg01no097_h02.g1)
ACCAG313871AG313872
length705692
length of high quality
(start - end)
634 (72 - 705)571 (56 - 626)
definitionCHROMAT_FILE: MSMg01no097_h02.b1 PHD_FILE: MSMg01no097_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:11 2005CHROMAT_FILE: MSMg01no097_h02.g1 PHD_FILE: MSMg01no097_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAATTCGTCAGAGCAAAATATCATTTCTCATTTTTTTCCACCTTC
TGTTGTTTTTAACATTTTGGCCCAGGCCTTGTTACAGACTCTACTTTAGG
GGCTCCCTCCTTCATTGCTCTCATTAAAACTATTGACTTATAGATTCAGG
AAAAGAAACAAATATTACTTAGCTCTGTCTTTTTTTTTCCTTTTGCTAGA
ATCTGTAATACAAAACAAGCAAGTAAAAATATCTATAGAAAATTGCTGTG
CATGCATGTGCATTTAACTAGCTACATGGGTATGTAAATATATATATGCA
TTATAGTTTTATATATGCATTCAGATTACTAATATTAAGCTTAATAACAT
GTATTTTGGCAGTTAGAAATTGGTGGCATCTAAAATAACATTCATCTATT
TCATTAAATAATCTAATAAAATATATTTCAAGTAGTCTGTTCAAAAAACT
TATTACCAGGCAAGACTGAAACTCTTCAAGGTGCAAAGGAAATATAATTG
AAGTAGGATTATAAATAAGTAATAGCACAAAATAAAATTGGAAAAAATTA
AAATTCATACTATATTAACAGAAAGAGTTTTTAAAGGCTGACATAGAAAT
CTCCTTTACCTTAGACATATGAAACATATCCAATTTATATTCATTATATT
ATAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGGCCCACCAACTTACCCACAAAATGTTCCACCCAAAATGTGTAT
TGCCTATGAAGTGGAGGGACAAAGATGGAGCAGAGATGGAGAGAATGGCC
AACCGATGACTGGCCCAACTTGACACCCATGCCATGAGCAAGAAACAAGC
CATGACAGTATTAATGGTACTCTGTTATGCTTGCAGATAGGAGCCTGGCA
TAACTGGCCTCTGAAATTTCCATCCAGCAGCCTTTGGAAGAAGATGCAAA
GACCCAATGCCAAACATTAGACAGAGCTGTGGAATTGTGGAAGAGTTGGG
GGAAGGCTTGAAGGACCCAGAAGGGATAGAAACACCCCAAAAAGATCAAC
AGAATCAACTAATTTGGACCCTTGGGAGTTCCCAGAGACTGAACTACCAA
CCAAAGAGGAAGCATGGGCTAGACCTAGCCCATCCCAATCCCCCATATAT
ATATATATCGTAGATATCCAGCTAATTTTTTCTGGTGGGTTTCCCAGCAT
CTGGAGTGGGAACTGTTCCTGAATATGTTGCCTGGTTGAGAATATTATTC
CCCTAACTGAGCTGCCTTGTCTGGCCTCAGTGGGAAAGGATGAACATAGT
CCTACTGTGATTTTATATTCCAGAATGGTTAATATCTTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_h02.b1 MSMg01no097_h02.b1 CHROMAT_FILE:
MSMg01no097_h02.b1 PHD_FILE: MSMg01no097_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:11 2005
         (634 letters)



>mm_chr5_55949688_55950723
          Length = 1036

 Score = 1187 bits (614), Expect = 0.0
 Identities = 630/636 (99%), Gaps = 2/636 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatcatttctcatttttttccaccttctgttgtttttaacattttggcccaggccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aatatcatttctcatttttttccaccttctgttgtttttaacattttggcccaggccttg 777

                                                                       
Query: 61  ttacagactctactttaggggctccctccttcattgctctcattaaaactattgacttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ttacagactctactttaggggctccctccttcattgctctcattaaaactattgacttat 717

                                                                       
Query: 121 agattcaggaaaagaaacaaatattacttagctctgtctttttttttccttttgctagaa 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 716 agattcagaaaaagaaacaaatattacttagctctgtctttttttttccttttactagaa 657

                                                                       
Query: 181 tctgtaatacaaaacaagcaagtaaaaatatctatagaaaattgctgtgcatgcatgtgc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 656 tctgtaatacaaaacaagcaagtaaaaatatctttagaaaattgctgtgcatgcatgtgc 597

                                                                       
Query: 241 atttaactagctacatgggtatgtaaatatatatatgcattatagttt--tatatatgca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 596 atttaactagctacatgggtatgtaaatatatatatgcattatagttttatatatatgca 537

                                                                       
Query: 299 ttcagattactaatattaagcttaataacatgtattttggcagttagaaattggtggcat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttcagattactaatattaagcttaataacatgtattttggcagttagaaattggtggcat 477

                                                                       
Query: 359 ctaaaataacattcatctatttcattaaataatctaataaaatatatttcaagtagtctg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctaaaataacattcatctatttcattaaataatctaataaaatatatttcaagtagtctg 417

                                                                       
Query: 419 ttcaaaaaacttattaccaggcaagactgaaactcttcaaggtgcaaaggaaatataatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttcaaaaaacttattaccaggcaagactgaaactcttcaaggtgcaaaggaaatataatt 357

                                                                       
Query: 479 gaagtaggattataaataagtaatagcacaaaataaaattggaaaaaattaaaattcata 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaagtaggattataaataagtaatagcacaaaataaaattggaaaaaattaaaattcata 297

                                                                       
Query: 539 ctatattaacagaaagagtttttaaaggctgacatagaaatctcctttaccttagacata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctatattaacagaaagagtttttaaaggctgacatagaaatctcctttaccttagacata 237

                                               
Query: 599 tgaaacatatccaatttatattcattatattataat 634
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 236 tgaaatatatccaatttatattcattatattataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1036
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1026
Effective search space:   640224
Effective search space used:   640224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)