BAC Information

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BAC

Clone NameMSMg01-097L24
Chromosome5 (Build37)
Map Location 6,244,080 - 6,244,182
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097L24.T7 (MSMg01no097_l24.b1)MSMg01-097L24.TJ (MSMg01no097_l24.g1)
ACCAG314103AG314104
length7411,144
length of high quality
(start - end)
114 (141 - 254)---
definitionCHROMAT_FILE: MSMg01no097_l24.b1 PHD_FILE: MSMg01no097_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:36 2005CHROMAT_FILE: MSMg01no097_l24.g1 PHD_FILE: MSMg01no097_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAACCTGGAAAATGGAAACAGGTTACATAAAAAGGACCGCGGAAGAAAAT
AAAAAANGGATCTATAATTGCGGCGCTATGCGACTCACTATTTCGACAAA
TCCGCGGAATTCCAGGACTTTCCCACCTACACAGAGGAGCCCTGTTGCGT
AACCCCCCCTCCAAAAAAAAACATTGTTCAGTAATATATCAAATTTAAAC
AATAGTTAAAAATATCTTTTGACACAGAAAGATCATGATAATATTTTGTT
GACTGAACAAACAATTTGTTAAATACATGCACAATATTATATAAAGCTTT
ACTTAGTGTGCTTGAACATGTTTTGAATTAACACATATGAGATAGAATGA
TGGATACAAGAAAACATAATATTATCTTTAATGGAGATTAGGAGTAATAA
ATAGGAACAATCAAAAAGTTTTAGCTGCATCTATAATACCTGAAAATGTA
TAAGGAGAAGGAATTATTTATTGAAATAACTACCACCAAAATATTTCTCT
TTAAAATGAAACGTGTTATATATCTTTTGACTTGTTATATCCGGCGAAGG
AGTGATTTGGAACTCTATGATGTTATGCACTTTCTCATTCTGAATGATAT
CTGCTTCTTTACAAATTGAAAACCGGTACTTCGCTACACCAACTTAAAAA
AATGAGGATCTCTTCGGACTGCACGTTCCCAGACCCGGCATCACAACCAT
GGAAAGTGCCCCCGTATAAAGAGCACCTCCGATGTCATGCC
CTATCCACCCGAAANGGGCCGCCGTCCACTATCCACCTGGACTACCTATC
TCTATTATCATCTCGCGGTTCTCGGTGTGTCGCACTCACAGCTCGTGACC
TTCTCTGTCGCATACCGCCTCTGTTTCAACCAATCTTGCGGGTGGGTAGT
CGCTCGTGTGCGGGCGAAAAATACCGTTGCGCCTCACAAATTTACCCGTA
CCCCCATGGCTGAATGGTGTTTGTGGGAATATTGGAACACATGTGATAAC
CACTCCAATATCTGTTGTGCACAAACAAATAAGACCAATAACTTCGCGTG
CTGGTTTGTTTTTGTCGTGCACTTGGTAAAACGCAATTGCACCGGCGTGT
AACACAAAAACATGTTGTGGTGTCCTATTTCGTTGTGGGCTAAACACAAC
ACATTTTCCGTAAACCACCTTTTTATTTTTTTCGTGATTGGTATACCTGG
CATCGCGTACCCACAAACCACACATTTGTTTATTTGTTCGGTGGTCTGTG
GGTCGGTTTGGACACCCACCCTGCTTGTCCCATTTGGTTCACCATCTATT
GTGGTTCGGTGCGGCATATCTCGTGGTCTCATTTTTTTATATCCCTTCTC
CGGTGTTAATCCAGCGGTTGTGCGACACCCACACCTACTACCCTTCCTGT
TATCATCGTTCTTTGTGGTAGAATAAACCACACATGAATTCGGTTGGGTG
ACACTTGCTGCATACCACACAATACGGTGGGCTACATCATTTGTGATTAC
TACGAAAATAGGTGGGGGGTGTGGCTGTGTGTGCACAATCTATGTGGTGC
CACAAACTACACACCCCCGGTCACCCTTGTGCGTTGCGGGGGTGGGTGGC
ACAACGTGGGTGCGCCAACGTGTAAAACATTGTGCGCAAATTCGCTTGTG
CAAACAACCACAATACGTGTGGGGGTGTGGGACAAATAACTACTTTCATT
GTGCACACCGTTGGGGTGTTTATTTGGTTTNATTTGTCCCTCCTCCCCTC
CTCCTTGGTCCCCACACTTCCACACTCTTCATATACTTCGGTCATACACC
CTTGTGGTTCAATTCTAATCTGGGGTGCTATAAAAATCAACAACTCAACT
CTCTCTCGCCCTGTGTTGGACCACCACACTACCACAATATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_l24.b1 MSMg01no097_l24.b1 CHROMAT_FILE:
MSMg01no097_l24.b1 PHD_FILE: MSMg01no097_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:36 2005
         (114 letters)



>mm_chr5_6243872_6244385
          Length = 514

 Score =  176 bits (91), Expect = 4e-49
 Identities = 100/103 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   gtaaccccccctccaaaaaaaaacattgttcagtaatatatcaaatttaaacaatagtta 68
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtaatcccccctccaaaaaaaatcattgttcagtaatatatcaaatttaaacaatagtta 252

                                                      
Query: 69  aaaatatcttttgacacagaaagatcatgataatattttgttg 111
           ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 251 aaaatatcttttgacacagaaaggtcatgataatattttgttg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)