BAC Information

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BAC

Clone NameMSMg01-097P16
Chromosome5 (Build37)
Map Location 129,634,925 - 129,810,018
singlet/doubletdoublet
Overlap geneGpr133
Upstream geneTmem132d, Fzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, LOC100039355
Downstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P16.T7 (MSMg01no097_p16.b1)MSMg01-097P16.TJ (MSMg01no097_p16.g1)
ACCAG314276AG314277
length793793
length of high quality
(start - end)
175 (132 - 306)243 (130 - 372)
definitionCHROMAT_FILE: MSMg01no097_p16.b1 PHD_FILE: MSMg01no097_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005CHROMAT_FILE: MSMg01no097_p16.g1 PHD_FILE: MSMg01no097_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,809,844 - 129,810,018)(129,634,925 - 129,635,167)
sequence
TTAAAATTAAAAAANNTAACTAATATTANTCANTCTTTCTCCCCCGCTTC
CNNNCGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAC
CGCGGAATTCTCCCCTTTTTCCATCCTGATCAGCTACCTTTATACTTATT
CCATTTCAGAGAGACTGCCATGGTTGAAATTGAGTTTGTAGCCTAAAGCA
CTGAACACATTTATCAAGCAGGGTGTTAATAAGAGAAATAGTGTATGCGG
AGGATGCTTGCATATATATCTGTGTCTGTTCTCGGAACAGGAAAGCATTC
TAAAGGTACACAAAGTTGCAAGGCATGGAAGACCTTTTTATAGCCACCGT
TTGACATCAACTCCCACAGACTTTGTGTTTTTCTCAGGGTATAGACTCGG
CAAGGCGACCAGCAGTGATTATAATGGCCACCGCCCCCGCTAGCTCAGGT
ATGTTTTGGTGTACCGCGCCATGGAGGTATCCCAGCATCTGTTATAGCTA
GTGCTCACGGAGCTATTCTGAATAGGGACTGTATTCTGAATATGACAGTG
TCACCTAGTTGACAGATACCTGCGCTGCCTCTCTAATAAACCCATACTTA
GTCAGCTTGTTTACCGCCCGGACCCTCAAAGCCCTGGTTATACCCTGCTA
CCATTTTTACGATTACGGATTATACCTTTGTTGGATGCGTTTTTTCTCCT
TAATGGAAGCTAATACCTCCCCATATTCTCCGTTCTGATTTTTATTTTCT
GTTTCCCCAAGCTGGGTTAAAATTCAACCCTATGTTTCCCCGG
CCCACAAAAACCANAAAAANGTTCCGGAATCATCCACCCCCTCACCATAC
CCANNTCTATGAAGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGGGAACGGGCGCTGAC
TCCTGATGAGATCAAGATGTACTTTACCGCTGCCATTGGCCAGTGCATGG
GACGGCTGTGCGTGGATCTGGGGGTCTGCACCTCGAGACGCTCAGCACAG
GGTTCCTCACCACCTTTCAGCTCTCCAGCCCTTGTCTGGCACATGTGAGC
TGTGTCTTAATGACCCTTATGAGTTGAGTCATGTTTCTGAACACCTGTTC
CCCGAGATAAATGAGGGAACAGTTCTTCTGCGACACACTGAGATTAATAT
TCCCAGATCCTTGTAGGTTCCGCGCCCCCCGACCCGGCTGATTACAGACG
TTTCGGTGGCAAACATTTACCGTCCCTTAACAAATGTCTCCCGGTGCTAC
TGTCCTGTGGACCCTCTCTCTGCTGGCGCTCAGACCCTACAGTACCTTCT
CCTTGCGCGACTATTGGTTTTTGCCTCGTACTCTAGCACTTATACGGCAG
AGCCTTTATGTCCCCTCGTCTTCACTTTTGCTATGGGTATCCAACAAACA
AACTCTTAGATAACCTTACCTTCGATCGCCCTCTGGTGTCCCCCTTCTAT
GGTTGGCAATTTAATAATCACACCTCATGGCCGCGGGCGGTCACGGGAGT
CAAAACGCTTTCTCTCTCTCACGCCAACCCACCCCGTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p16.b1 MSMg01no097_p16.b1 CHROMAT_FILE:
MSMg01no097_p16.b1 PHD_FILE: MSMg01no097_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:55 2005
         (175 letters)



>mm_chr5_129809644_129810218
          Length = 575

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctacctttatacttattccatttcagagagactgccatggttgaaattgagtttgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agctacctttatacttattccatttcagagagactgccatggttgaaattgagtttgtag 316

                                                                       
Query: 61  cctaaagcactgaacacatttatcaagcagggtgttaataagagaaatagtgtatgcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cctaaagcactgaacacatttatcaagcagggtgttaataagagaaatagtgtatgcgga 256

                                                                  
Query: 121 ggatgcttgcatatatatctgtgtctgttctcggaacaggaaagcattctaaagg 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggatgcttgcatatatatctgtgtctgttctcggaacaggaaagcattctaaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no097_p16.g1 MSMg01no097_p16.g1 CHROMAT_FILE:
MSMg01no097_p16.g1 PHD_FILE: MSMg01no097_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:55 2005
         (243 letters)



>mm_chr5_129634725_129635367
          Length = 643

 Score =  408 bits (211), Expect = e-118
 Identities = 235/243 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgggaacgggcgctgactcctgatgagatcaagatgtactttaccgctgccattgg 60
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 catctgggaacgggcactgactcctgacgagatcaagatgtactttaccgctgccattgg 260

                                                                       
Query: 61  ccagtgcatgggacggctgtgcgtggatctgggggtctgcacctcgagacgctcagcaca 120
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtgcatgggatggctgtgcgtggatctgggggtctgcacctcgagacgctcagcaca 320

                                                                       
Query: 121 gggttcctcaccacctttcagctctccagcccttgtctggcacatgtgagctgtgtctta 180
           ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gggctcctcaccacccttcagctctccagcccttgtctggcagatgtgagctgtgtctta 380

                                                                       
Query: 181 atgacccttatgagttgagtcatgtttctgaacacctgttccccgagataaatgagggaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgacccttatgagtcgagtcatgtttctgaacacctgttccccgagataaatgagggaa 440

              
Query: 241 cag 243
           |||
Sbjct: 441 cag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)