BAC Information

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BAC

Clone NameMSMg01-097P18
Chromosome5 (Build37)
Map Location 27,174,381 - 27,174,515
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P18.T7 (MSMg01no097_p18.b1)MSMg01-097P18.TJ (MSMg01no097_p18.g1)
ACCAG314280AG314281
length830800
length of high quality
(start - end)
135 (128 - 262)138 (132 - 269)
definitionCHROMAT_FILE: MSMg01no097_p18.b1 PHD_FILE: MSMg01no097_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005CHROMAT_FILE: MSMg01no097_p18.g1 PHD_FILE: MSMg01no097_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATATTTTTATCTATTATTAATATATTATTTTTCACCCCCCCTCACCTC
TCTTNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAT
CCGCGGAATTCTAATAATTTTCCGTTGCAAGTGAAGGGTGAGGGAAGCTC
GTGGATCAGGAAGAGATTATGTGGTGGGGTGTGTGCCTTTATTCCCAAGG
CAGACAGATCTCTGTCAGAAGAGGAGGACCAGGAGGAGGAAGAGGAGGAG
AAGGAGGAGTAGGACGTTCCCCCCCCTTTCCCCTCTTCGCCCCCTTATTC
GTACTCCCGCCCCTTTATTACCTTAACGTTGTAATATAAAATATATATAC
TATAAAAAGTTATTGTCTTCCATACCTTTTTTTTTTCTTCTCCCCCCCCC
TCTTCTTTTTTCTCTCCCCCCCTTTTTTTTTTTCCCCCCCCCCCCCCTTT
TTTTTCTCCTTCCGTACTACATCATTTCTCCCCCTTTTCTTATCCCAAAA
CTTACATCTTTCTGGTGTGGTCCCTGGGTTTTCTTCTCCCCTCTATATCG
CTTTCTTTCTTTTACAACATTACCGCCCCCTTCCGCCCTTTTTTTTTACC
CCCCTCCTGTCGACCACTCAATGTCGCCCCCCCCCCCCTACTTTCCCCTT
TTTATCACTTTCCTCACCTCTTTTTCCCTCCCCTTCGTTGTCCTTTCTCT
TCCCCCTCACCGTTTATTACTCAATGTTCTAACCTAACACACTTTACCCT
TCTTTGTCCCTTATACTTATTATTTATGTTTTGCTTCCCCCCTCTCTATT
CTCCTTTCCCTACCATTAGCTGTCTTCCCC
CCCCCCTCGCCCCCCCGNCATTTACCCCTCTTACCCCCTCTNCCCTTCTC
TCCCCCCCTCTATGATAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTGCAAGCCTGGGCCA
GGATGCCTCCTGATCACTCCAGGTCCATTTCTCATCCTGCCTTGCAGGCA
GGAGCCCCAGTGGCCTGGGATTAGCTGCCCACTGCATCTGTTTCTTGAAA
TTTCAATCCGAGAAGACAAACAGCCCAACAATTTGATAAATCCCTCATTA
ATCCTGGCTCAGAACTCTTGAATGCTGTGAAGCTGACAAGGCTGTTCATG
CAGAGAGAATGCATTCTTGGCAGTGATCATCTAGCAGAGACATTCTGGAG
GGAGCCACTTCCTCCCTGTCTGGCTGCGACTTGGCGCAGAAGCCATCTCA
CCCATGTTCTTGGGCCTTTTGGCGGGCCCTGCCCCAATAACTTCCCCGCC
TGTTACGGCCCATGTGCTTTACCTCTACACCCGCCCCACCTCTGACCTGT
CTGCCTCCATGTCCATTGTGGATGTAACCCCCTGCCTTCCTGGGGCCCTC
TCAAACAGTAACTCCCGGCATAATCCTCTAGAACCCTCTTTACTTTGGAG
AAGACCTTGGCTGTCCTTGCCGCCATCTGCCATTGCGATTGCCCGCTTTT
CTCCTCTGAAACCCACCATCACAAACCACCTTCTCCCCGACACGTTCACT
GAATCCTATACGACTCTTCTTTTAACCACTGGTGCACCACCCCGTCAAAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p18.g1 MSMg01no097_p18.g1 CHROMAT_FILE:
MSMg01no097_p18.g1 PHD_FILE: MSMg01no097_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:55 2005
         (138 letters)



>mm_chr5_27174181_27174718
          Length = 538

 Score =  246 bits (127), Expect = 5e-70
 Identities = 133/135 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtgcaagcctgggccaggatgcctcctgatcactccaggtccatttctcatcctgcc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtgcaagcctgggctaggatgcctcctgatcactccaggtccatttctcatcctgcc 260

                                                                       
Query: 61  ttgcaggcaggagccccagtggcctgggattagctgcccactgcatctgtttcttgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgcaggcaggagccccagtggcctgggattagctgcccactgcatccgtttcttgaaat 320

                          
Query: 121 ttcaatccgagaaga 135
           |||||||||||||||
Sbjct: 321 ttcaatccgagaaga 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)