BAC Information

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BAC

Clone NameMSMg01-098D20
Chromosome5 (Build37)
Map Location 35,975,927 - 35,976,433
singlet/doubletsinglet
Overlap genenone
Upstream gene0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3
Downstream geneHtra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D20.T7 (MSMg01no098_d20.b1)MSMg01-098D20.TJ (MSMg01no098_d20.g1)
ACCAG314472AG314473
length684691
length of high quality
(start - end)
129 (57 - 185)518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no098_d20.b1 PHD_FILE: MSMg01no098_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005CHROMAT_FILE: MSMg01no098_d20.g1 PHD_FILE: MSMg01no098_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAT
GTCGACCAGGTTGGCATTAAAACCCACAGAAATCTACCTGTCTCTGCCTC
TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG
CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCGTGCTGGGATTAAGAGCA
TGCACCCCTGGGGTTGGGGAGATGGCTCAGCAAGTAATAGCACTGACTGC
TCCTCCGAAGGTCCTGAGTTCAAATCCCAGCACCAAGGCTCACAACCATC
CGTAGTGAGACTTGGCGCCCTCTTCTGGTGCATCTGAATACAGCTACAGT
GTATTTATTTATAATAATAAATAAATCTTTGGGCTGGAGCAAGGCTGACC
ATAGCAATCAAGCTTGACCGGAGCCCAACCACCACATGAAGGCTCACAAG
CATCTGTACAGCTATAGCGTACTCATATACATAAATAAATAAATCTTTTT
TTTTTTTAAAAAGGCATGCCCCCACCCAGCTCTTGGCTTTATTTTAAATA
CCAATAATCTCACATGCTCTTTAGACTAAGAGCAGCTTTAGGACTTGCGC
TACATATCCATGTCTTAGATGAAGTCAAGCTCCACCGACCCGGTCATCGT
ACGCAGATGGTCCAAGTCTTACCTCTTCCCTGCA
ACCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCTGTGGACCCCTGTGCATG
ACTGGGAGGCAACTGAAGAGCCAGGATTCCTGGGGGAGGAGGCTGCCCTT
GTCCCAGAGCCAGTGCTGGTTGGTGCTGATTTACAAGATAGGTGGTGGGG
GTTAGGGGAGCCAAGGAATCCTGATGATTTCTGGGTGACTGGAATGGGGT
TAGTGGATGGAGATTGCTGTCAGGCCACTGGATACCTAGTGAGGTCTTCC
ATACCTGCTCTGTGCTCCCAAAGGCTTTCTGGGACACCAAGTTTGTCCCC
TTTACCTCTCCCCTTGGTCTCTCGCCCTGACTTTCCCTTCCTGGGTGTGC
TCCAGCTTTGTGTCACCATTTTCAGGACTCCTGTACCATGTGCCCAATGG
GCAGCCTGGTACTATATCTTTGGGGTGCTTCTGGGTACATGCTGGGTCTG
TAGGAGCTGTGGTGAGAGTCAGAGACCAGGTGACTCTGCAGCTGTTCATA
GAGGTCTGGAGAACAAAAGAGACAGCCACATGCAACTGCAGGGGCCTTTC
TCCCCGGCTTGTACGTGCCTGACTGCATTCTACTCTTGGCCTCATGGCTG
GAATTCAGTTAAGAAGATCCTGGCATCTTCTTCCTTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d20.g1 MSMg01no098_d20.g1 CHROMAT_FILE:
MSMg01no098_d20.g1 PHD_FILE: MSMg01no098_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:17 2005
         (518 letters)



>mm_chr5_35975727_35976644
          Length = 918

 Score =  843 bits (436), Expect = 0.0
 Identities = 493/518 (95%), Gaps = 11/518 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctcctgtggacccctgtgcatgactgggaggcaactgaagagccaggattcctgggg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcctgtggacccctgtgcatggctgggaggcaactgaagagccaggattcctgggg 260

                                                                       
Query: 61  gaggaggctgcccttgtcccagagccagtgctggttggtgctgatttacaagataggtgg 120
           ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 261 gagaaggctgcccttgtcccagagccagtgctggatggtgctgatttacaagatgggtgg 320

                                                                       
Query: 121 tgggggttaggggagccaaggaatcctgatgatttctgggtgactggaatggggttagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggggttaggggagccaaggaatcctgatgatttctgggtgactggaatggggttagtg 380

                                                                       
Query: 181 gatggagattgctgtcaggccactggatacctagtgaggtcttccatacctgctctgtgc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gatggagattgctgtcaggccactggatacctagtgaggtcttcgatacctgctctgtgc 440

                                                                       
Query: 241 tcccaaaggctttctgggacaccaagtttgtcccctttacctctccccttggtctctcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccaaaggctttctgggacaccaagtttgtcccctttacctctccccttggtctctcgc 500

                                                                       
Query: 301 cctgactttcccttcctgggtgtgctccagctttgtgtcaccattttcaggactcctgta 360
           |||          |||||||||||||| ||||||| ||||| |||| |||||||||||||
Sbjct: 501 cct----------tcctgggtgtgctcaagctttgcgtcac-atttccaggactcctgta 549

                                                                       
Query: 361 ccatgtgcccaatgggcagcctggtactatatctttggggtgcttctgggtacatgctgg 420
           ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||
Sbjct: 550 ccatgtgcccaatgggcagcctggtactgcatctttggggtgctcctgggtacatgctgg 609

                                                                       
Query: 421 gtctgtaggagctgtggtgagagtcagagaccaggtgactctgcagctgttcatagaggt 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 610 gtctgtaggagctgtggtgagagtcagagaccaggtgactcggcagctgttcatagaggt 669

                                                 
Query: 481 ctggagaacaaaagagacagccacatgcaactgcaggg 518
           ||||||||||||||||||||||||||||| | ||||||
Sbjct: 670 ctggagaacaaaagagacagccacatgcagccgcaggg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)