BAC Information

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BAC

Clone NameMSMg01-098H06
Chromosome5 (Build37)
Map Location 23,372,212 - 23,533,093
singlet/doubletdoublet
Overlap geneLOC671410, Drctnnb1a, LOC627317
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7
Downstream geneKlhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H06.T7 (MSMg01no098_h06.b1)MSMg01-098H06.TJ (MSMg01no098_h06.g1)
ACCAG314631AG314632
length689702
length of high quality
(start - end)
506 (21 - 526)294 (50 - 343)
definitionCHROMAT_FILE: MSMg01no098_h06.b1 PHD_FILE: MSMg01no098_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:34 2005CHROMAT_FILE: MSMg01no098_h06.g1 PHD_FILE: MSMg01no098_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,372,212 - 23,372,713)(23,532,800 - 23,533,093)
sequence
CTACCATTTCGGAGAGGATCCGCGGAATTCCTAATTCCTCGCTAGGCCTG
AGTTGTATAAAAAAGCCAAGTGAGCAAGTCATGTGAGCATGACAGCAGGC
AGTGCTCCTACAGGTCACTGCTCCAGCCCCTGCCTCCAGGTTCCTGCCTT
GGCTTCCTTTGGTGATGCACTGTAAGTTGTTACATGAAATGAGTCCTTTC
CTCCTCTAAGCTGGGTTTTGTCATGGTCTTTATTGCCGCCATAAACAGCC
AGTTAATGTATCACTGATAAGTATTTTGCTCAATCCCACTATTGATATGG
TTCTGTAAGGTGGTCTCTTGGAGTGGAAACACCCATTGAATAGATACCTA
AGATGGGCCCAGTGTGTGTGGTGCTGCTCTCAGCAAGGGGACCATTGATC
CTGGCTCCCAGGTTGACCATAGTAACCATACTACCAGAGGCCTGTGCATC
CTCCTAGGCAGTGGTTTCTTAATGTCTATGGTTCTAATACCACAGCACCT
ACCAACATCTACGTTGTCTGCATAATGGGAATAAATGTAAACGATACTTG
ATGGCATTGTGTAGGTGCAGTCAGGAAGCCCAGTGGCCCCTGTGTCTTGC
TGTCTACGGCAGACTTCCCCTGTTATTCACAGCACTCATGAAAGTAATAT
AAACACAGCTAAAATACAGCTATTGAAATGTTGACCAGC
GGCGGCCGCCTGTTCCACAAATTGAGGTGACCTATAGAAGTACCAGCGGA
ATTCTCATGAGGTTTCTTCCATGAAGGAAGAGCTACAGGCATTAGTCGGT
GCTTGTGAGAGGAGGAATCTGTTTTCTCCAAGGATGAACCCTGTGGTAGG
CTAGACAATCCCAAGACGACAATCCGTGGTGCACAAGAAACCTTTAGGGC
TACATAGTCAGACGTTCAAAAACTTTACTTAAGATCTGTTTTTAAAATGC
TCTTTTGTCTTTTTTTTTGAGGTGTGATATTAAATCTGATCACATGCCCT
CATAATGTTGAGATGAGCATGTGTCGCTGTTTTAACCTGTTGATGGGCGG
TTGTAGACGTCTCCAGTAGACTCTGGTGCTGTTCTGGAGATAAAGTTTCT
TGATAGTCGCCTGTTTCTGACATGTATGAGGATGATCTCATAGTGCACCA
TTCTCCCGGCCCATAAGCTTTGTAGTGCATTGTTTTCTGAATACAGAGAG
AGTCTGAGCATAGGACATGAGGAGCTTTTCCTTCCTGCCTCGGCAGGCCG
AATATAGTTGAGCCGCATAAATGTGCTTGCGCAGATCTCACCTTGTGCTC
AATTTCTCCCCTATCCCCCTTACACTTAATTGTATACTCTATGCAAATAG
GGATTACCATTTCTTATTCTACAGTCTATATAGGACTTCTATCGTTATTC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h06.b1 MSMg01no098_h06.b1 CHROMAT_FILE:
MSMg01no098_h06.b1 PHD_FILE: MSMg01no098_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:34 2005
         (506 letters)



>mm_chr5_23372008_23372913
          Length = 906

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaattcctcgctaggcctgagttgtataaaaaagccaagtgagcaagtcatgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaattccttgctaggcctgagttgtataaaaaagccaagtgagcaagtcatgt 264

                                                                       
Query: 65  gagcatgacagcaggcagtgctcctacaggtcactgctccagcccctgcctccaggttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagcatgacagcaggcagtgctcctacaggtcactgctccagcccctgcctccaggttcc 324

                                                                       
Query: 125 tgccttggcttcctttggtgatgcactgtaagttgttacatgaaatgagtcctttcctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccttggcttcctttggtgatgcactgtaagttgttacatgaaatgagtcctttcctcc 384

                                                                       
Query: 185 tctaagctgggttttgtcatggtctttattgccgccataaacagccagttaatgtatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctaagctgggttttgtcatggtctttattgccgccataaacagccagttaatgtatcac 444

                                                                       
Query: 245 tgataagtattttgctcaatcccactattgatatggttctgtaaggtggtctcttggagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgataagtattttgctcaatcccactattgatatggttctgtaaggtggtctcttggagt 504

                                                                       
Query: 305 ggaaacacccattgaatagatacctaagatgggcccagtgtgtgtggtgctgctctcagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaaacacccattgaatagatacctaagatgggcccagtgtgtgtggtgctgctctcagc 564

                                                                       
Query: 365 aaggggaccattgatcctggctcccaggttgaccatagtaaccatactaccagaggcctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggggaccattgatcctggctcccaggttgaccatagtaaccatactaccagaggcctg 624

                                                                       
Query: 425 tgcatcctcctaggcagtggtttcttaatgtctatggttctaataccacagcacctacca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcatcctcctaggcagtggtttcttaatgtctatggttctaataccacagcacctacca 684

                                 
Query: 485 acatctacgttgtctgcataat 506
           ||||||| ||||||||||||||
Sbjct: 685 acatctaggttgtctgcataat 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_h06.g1 MSMg01no098_h06.g1 CHROMAT_FILE:
MSMg01no098_h06.g1 PHD_FILE: MSMg01no098_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:34 2005
         (294 letters)



>mm_chr5_23532497_23533190
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcatgaggtttcttccatgaaggaagagctacaggcattagtcggtgcttgtgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 597 aattctcatgaggtttcttccatgaaggaagagctacaggcattagtcggtgtttgtgag 538

                                                                       
Query: 61  aggaggaatctgttttctccaaggatgaaccctgtggtaggctagacaatcccaagacga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 537 aggaggaatctgttttctccaagaatgaaccctgtggtaggctagacaatcccaagacga 478

                                                                       
Query: 121 caatccgtggtgcacaagaaacctttagggctacatagtcagacgttcaaaaactttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caatccgtggtgcacaagaaacctttagggctacatagtcagacgttcaaaaactttact 418

                                                                       
Query: 181 taagatctgtttttaaaatgctcttttgtctttttttttgaggtgtgatattaaatctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taagatctgtttttaaaatgctcttttgtctttttttttgaggtgtgatattaaatctga 358

                                                                 
Query: 241 tcacatgccctcataatgttgagatgagcatgtgtcgctgttttaacctgttga 294
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcacatgccctcagaatgttgagatgagcatgtgtcgctgttttaacctgttga 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)