BAC Information

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BAC

Clone NameMSMg01-098H18
Chromosome5 (Build37)
Map Location 60,767,017 - 60,836,439
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H18.T7 (MSMg01no098_h18.b1)MSMg01-098H18.TJ (MSMg01no098_h18.g1)
ACCAG314652AG314653
length718720
length of high quality
(start - end)		470 (39 - 508)553 (74 - 626)
definitionCHROMAT_FILE: MSMg01no098_h18.b1 PHD_FILE: MSMg01no098_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:37 2005CHROMAT_FILE: MSMg01no098_h18.g1 PHD_FILE: MSMg01no098_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,835,976 - 60,836,439)(60,767,017 - 60,767,569)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CATGGTAACCGGGCAGCTGGAACATATAATTTTGTAAATATGGATTTCTA
GGCAGTGTGAAATATGGACTTTTTAAGAGAAGAAATAGAAGCCTGAGCAC
TGAGTAAAAATGAATTTCTATCCCAAATATTGTCAATAGGAAGAGAAGCA
AAAGGTTAGCTTTTAGAGATGTTTTTAAAGGCAGAAGCAATTTGAATGGC
TAGAAGTTCACTGTGGTAAGAATGATGGTTTTGTTGTTGTTGTTATGCAG
GGGGTATTGAGTGTCTATATGTGTTAATGGAGAAGGTACAGGTGATGGTA
ATGATTCACTGTTGCATACACTAATATTGTGGAAGAGATCTTTTTCTTTA
TTCTTTGGATTGAAAATAAACTAAGACTCTTGAGTTTGTATAATGTGTCC
TGAACCTGATACAGCCTTCTCCTGAGAGGCTCTGCCAGAGCACTGCCAGA
GCATGACAAATACAGATGTGGATGTCTGCAGCCAACCGTCAGATTGAGCA
TGGTGATTTGACTGTTGCAGCTAAAGAACGTATTGATGGTGCTGCATGCT
TTGCACCTCTTATAATTTTTCCACTCCCCAGCCTTATTCTTCTTAGCTCC
CTTGACCTTATCCCTCCCCCATTTAGGTTTCTCGCAGTGTACCCGCGCTT
TCCTAATTTTTTTGTATN

CAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTGAAATTTGAATTCCTGGTATTCC
TTTCATTCTTGAGCTGACCAACATTCTTTACCTCAAGGATGAGTGTAAGC
AAGTGAATGATTCTAGTCTCTACTCCTATTTCATGTTCCCTGATATGACT
ACAGTTCTGACATATTTCTTTTGTCATTGTATGCTTCATGAGGCCATTTT
TTTTAGGCCTGTCTTCTGTTTTGTACATTTTACAATTGTGTTTGTGTTTC
TGAGATAAACAGAATTACATAAATATGAGTGTGTGTGCATGTGTGTTTAT
AGTATGTGCCTTGTTAAAAATATGTAACTAAGATGTTTATCAAGGATATT
CATTTTAGAGGTTTCAGTATATGGCTACTTGGCTCCTGTATTTTATGAAA
AGTCATGGTATCAGAAGTATGTAGTAAAGTTTCCTTATCATATATCAGAT
GAGAAATGAAGAAAGAATAAGCAAAATATGTTACCTTCAAAAATATGCCC
TGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTG
AAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCC
GTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTG
TACTTACCTATAATACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h18.b1 MSMg01no098_h18.b1 CHROMAT_FILE:
MSMg01no098_h18.b1 PHD_FILE: MSMg01no098_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:37 2005
         (470 letters)



>mm_chr5_60835827_60836696
          Length = 870

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatggtaaccgggcagctggaacatataattttgtaaatatggatttctaggca 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattccatggtaacagggcagctggaacatataattttgtaaatatggatttctaggca 554

                                                                       
Query: 67  gtgtgaaatatggactttttaagagaagaaatagaagcctgagcactgagtaaaaatgaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtgtgaaatatggactttttaagagaagaaatagaagcctgagcactgagtaaaaatgaa 494

                                                                       
Query: 127 tttctatcccaaatattgtcaataggaagagaagcaaaaggttagcttttagagatgttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttctatcccaaatattgtcaataggaagagaagcaaaaggttagcttttagagatgttt 434

                                                                       
Query: 187 ttaaaggcagaagcaatttgaatggctagaagttcactgtggtaagaatgatggttttgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaaaggcagaagcaatttgaatggctagaagttcactgtggtaagaatgatggttttgt 374

                                                                       
Query: 247 tgttgttgttatgcagggggtattgagtgtctatatgtgttaatggagaaggtacaggtg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgttgttgttatgcagggggtattgagtgtctatatgtgttaatggagaaggtacaggtg 314

                                                                       
Query: 307 atggtaatgattcactgttgcatacactaatattgtggaagagatctttttctttattct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atggtaatgattcactgttgcatacactaatattgtggaagagatctttttctttattct 254

                                                                       
Query: 367 ttggattgaaaataaactaagactcttgagtttgtataatgtgtcctgaacctgatacag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttggattgaaaataaactaagactcttgagtttgtataatgtgtcctgaacctgatacag 194

                                                       
Query: 427 ccttctcctgagaggctctgccagagcactgccagagcatgaca 470
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ccttctcctgagaggctctgccagagcactgccagagcatgaca 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no098_h18.g1 MSMg01no098_h18.g1 CHROMAT_FILE:
MSMg01no098_h18.g1 PHD_FILE: MSMg01no098_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:37 2005
         (553 letters)



>mm_chr5_60766817_60767769
          Length = 953

 Score = 1054 bits (545), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgaaatttgaattcctggtattcctttcattcttgagctgaccaacattctttacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgaaatttgaattcctggtattcctttcattcttgagctgaccaacattctttacct 260

                                                                       
Query: 61  caaggatgagtgtaagcaagtgaatgattctagtctctactcctatttcatgttccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggatgagtgtaagcaagtgaatgattctagtctctactcctatttcatgttccctga 320

                                                                       
Query: 121 tatgactacagttctgacatatttcttttgtcattgtatgcttcatgaggccattttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgactacagttctgacatatttcttttgtcattgtatgcttcatgaggccattttttt 380

                                                                       
Query: 181 taggcctgtcttctgttttgtacattttacaattgtgtttgtgtttctgagataaacaga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcctgtattctgttttgtacattttacaattgtgtttgtgtttctgagataaacaga 440

                                                                       
Query: 241 attacataaatatgagtgtgtgtgcatgtgtgtttatagtatgtgccttgttaaaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attacataaatatgagtgtgtgtgcatgtgtgtttatagtatgtgccttgttaaaaatat 500

                                                                       
Query: 301 gtaactaagatgtttatcaaggatattcattttagaggtttcagtatatggctacttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaactaagatgtttatcaaggatattcattttagaggtttcagtatatggctacttggc 560

                                                                       
Query: 361 tcctgtattttatgaaaagtcatggtatcagaagtatgtagtaaagtttccttatcatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctgtattttatgaaaagtcatggtatcagaagtatgtagtaaagtttccttatcatat 620

                                                                       
Query: 421 atcagatgagaaatgaagaaagaataagcaaaatatgttaccttcaaaaatatgccctgg 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagatgagaaatgaagaaagaataagcaaaatatgttaccttcaaaaatatgccctgg 680

                                                                       
Query: 481 ggctggtgagatggctcagtgggtaagagcacccgactgctcttctgaaggtccggagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctggtgagatggctcagtgggtaagagcacccgactgctcttctgaaggtccggagtt 740

                        
Query: 541 caaatcccagcaa 553
           |||||||||||||
Sbjct: 741 caaatcccagcaa 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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