BAC Information

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BAC

Clone NameMSMg01-098O08
Chromosome5 (Build37)
Map Location 138,779,816 - 138,780,068
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O08.T7 (MSMg01no098_o08.b1)MSMg01-098O08.TJ (MSMg01no098_o08.g1)
ACCAG314959AG314960
length719716
length of high quality
(start - end)
339 (54 - 392)261 (54 - 314)
definitionCHROMAT_FILE: MSMg01no098_o08.b1 PHD_FILE: MSMg01no098_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:09 2005CHROMAT_FILE: MSMg01no098_o08.g1 PHD_FILE: MSMg01no098_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCCAATTTC
CCGTCTTGCTAAGGACGAACTAGGACTGTTGGAACACTGGCAGATGGCTT
TAGCTACCTCAGAATTCAATCTTAAAAGGCACTTATGACAGGAAAATATT
GAAAGAGAGCACGTGGGTCCATACACTAGACTAACGCAGGAATGGAACAC
GAGAATGAAAAATTACTGTATGGGTAGGGAACGCTAGACTCCAGGAGGAG
AGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAGCCTCTCGGC
TTGTCCAGTTGACTCGACCAGAGAGCGTAGCATGCCCCAGTACAGGGGAA
CGCCAGGGCCAAAAAAAATGGGAATGGGTGGGTAGGGAAGTGGGGGGGCA
CGCCCCCCCCCCATTTCCTCTTTTCTCTTCTTCTCTTTCCCTCTTCCTCC
TCTTCTCCCCCTCTCTTTTTTTTTTCTTCTTCTCCCTTCCGCCTTCTCGC
CCTCTCGTTCCTCCTCCCCCCTTTTTTTCTCCCTTTATCCCCCCTTTCCT
TCCTTCCCATTTCTTCCCTCCCTTTTCCTCTCTTTTATATTTTCCTTCCG
CCTCTCCCTTTTTTACCCCCCCCCTTCCTCCCCCCCCCCCTTATCCTTTC
CCTCCTCTTCCCTCTTTCCTCCTCTCTCCTCCTTACTCCCCTTTTTTACC
CCCCCTCCTCCCTATTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCTCTTAATTCTCTGTAACATCAATTTATTACTCCTAGTCTATTCTGT
ACCAATAACAACAAGAAAAATAACTAATATTGCCTGCCAAGAAGCTGTGT
GTGGCTAAAGGATTAAGTCTGTTAGTATAGTTGGGACACTCAGCTGGTTG
TGGCGTGTACCCTCAGTGAAGGTTAGTGGCCATGGTATGACACCTTCCTT
GAAGCTTCTCTCTCCAGGACACTGGGTTACAGAGTGTGTTGGGGTGTGTG
TGTGTGTGTGTGTGTGCGCCCCTTCCCCTATCTTTTTTTTCCCCTCTCTC
CCCTTTTTCTCTTTTTTTCTTTTCTCCTCCCCCCCTCTCCCCCCCATCAT
TTTACACTCCCTCCTATAATTATTATCCTCTATTCTTTCTTCCTTTCTCC
CCATTTTTTTTTCTTCCTTCTTTTTCCCTTTTTCCTTCCTTTCTTTCTTT
CTTTTCCCCTCCTTCCCTCTCTCCCTTTTTTCTTCCTATCATTTTTCTTT
TTTCATCCCTTTACCATCTCTTTTTTCTTTTTTTTTCTCCCTCCTCCTTT
CCTTCTTCCTTCTTAACCTCTCTTCCCCCCCTCTATTTTATATTTCCTCT
TTTATTATTTTTCTTTCCATCCCACATTTTTTTCCCCCCCCCTCCCCCTC
CTCTTTCCCCTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o08.g1 MSMg01no098_o08.g1 CHROMAT_FILE:
MSMg01no098_o08.g1 PHD_FILE: MSMg01no098_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:09 2005
         (261 letters)



>mm_chr5_138779629_138780289
          Length = 661

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttaattctctgtaacatcaatttattactcctagtctattctgtaccaataacaaca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 ctcttaattctctgtaacatcaatttattactcctagtcttttctgtaccaataacaaca 381

                                                                       
Query: 61  agaaaaataactaatattgcctgccaagaagctgtgtgtggctaaaggattaagtctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaaaataactaatattgcctgccaagaagctgtgtgtggctaaaggattaagtctgtt 321

                                                                       
Query: 121 agtatagttgggacactcagctggttgtggcgtgtaccctcagtgaaggttagtggccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtatagttgggacactcagctggttgtggcgtgtaccctcagtgaaggttagtggccat 261

                                                                       
Query: 181 ggtatgacaccttccttgaagcttctctctccaggacactgggttacagagtgtgttggg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 ggtatgacaccttccttgaagcttctctctccaggacactggggtacagagtgtgttggg 201

                        
Query: 241 gtgtgtgtgtgtg 253
           |||||||||||||
Sbjct: 200 gtgtgtgtgtgtg 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)