BAC Information

Click to search

BAC

Clone NameMSMg01-100A22
Chromosome5 (Build37)
Map Location 69,436,110 - 69,436,348
singlet/doubletsinglet
Overlap genenone
Upstream geneAY616753, LOC666996
Downstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100A22.T7 (MSMg01no100_a22.b1)MSMg01-100A22.TJ (MSMg01no100_a22.g1)
ACCAG315849AG315850
length719700
length of high quality
(start - end)
314 (123 - 436)239 (57 - 295)
definitionCHROMAT_FILE: MSMg01no100_a22.b1 PHD_FILE: MSMg01no100_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:48 2005CHROMAT_FILE: MSMg01no100_a22.g1 PHD_FILE: MSMg01no100_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCATGGCTCACACTTAAGCATAGTAAAAGCAATATACAGCAAACCAGTAG
CAAACATCAAACTAAATGGAGAGAAACTCGAAGCAATCCCACTAAAATCT
GAGAGTAGACAAGGCTGCCCACTTTTTCCCTACCTATTCAATATAGTACT
TGAAGTCCTATCCAGAGCAATTTGACAACAAAGGACATCAAGGGAATACA
ATTTGGAAAAGAAGAAGTCAAAATATCACTATTTACAGATGATATGATAG
TATATATAAGTGATCCTAAAAATTTCATGAGAGAACTCCTAAACCTGATA
AACAGCTTCAGTGCAGCAGCTGGATATAAAATTAACTCAAACAAATGAAT
GGCCTTTCTCTACACTAAGGATAAACAGGCTGAGAAAGAAATTATGGAAA
CAACCCCCCCCTCACAATAGGCACAGATAATATTAAAATACCTTGGTGTA
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCT
GAAGATAGAAATTGAATAAGATTTCTAGAGATGCACAGATCTCCCATTTT
CCTGGATTGCCAGGATCAATATATACTAAATGCCTATCTTGCCTAAAGCA
ATCTAAAGAATTCATGCGATCCCCAAAGTCCCAACTCAATTTTTCCCCGA
ATTTCAAAGGCGCATTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATGATTGTCCTTTCTAGATGCAGTTTGAACTACAAACCTGCTGT
TACTTCAGAGAGCTCCACCTTCTTACTATCCAATCAAGTTCTTCATCTCA
CAGCATCAATGACTGAACCTTTGACCAACCTTCATGAAAGATACTCGTTT
GGATTTAATAAAAGTATCTTTCTTGCTTGAGACCTTTGTAGCTTTTAACC
CATGGGTCCTCACCAGTTTTCCATGCCACTTCAAGTCATGGATACGCGTC
CTTTGTTGTCCTTGTTTTCAGAGTTCAGCCCAGTTTCTCTCCTGTAATTC
TTCCAGAATAAGTTCTTTTGAACTGTTCCGAAAACTGTAGAGGAAACTTA
AGGATTCTTTGGAAAGTCAGTTGTGTTGGATGGCGTTTGGCTGGCCCAAA
CATGTGAAGGAGAGTTTTCCTGAAATGGACACAGGTGAAAGGCTAACGCC
CGACTTGTTTAGCAACATTTGCTTGACCCCCACGCCATGAGATAAGACGT
TCTGCTACGGCAAGTGTGTGACCACATCCCCGATGATGCATTTTCTCATG
AACATACCCATGCATTGCCCCCCCTTAAACTGCTAGGTGAGCTCCATTTG
CCCTAACTCCCTACACACACCCGCCCTTCACCACTCACTGGCGGCGCGGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_a22.g1 MSMg01no100_a22.g1 CHROMAT_FILE:
MSMg01no100_a22.g1 PHD_FILE: MSMg01no100_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:48 2005
         (239 letters)



>mm_chr5_69435910_69436548
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattgtcctttctagatgcagtttgaactacaaacctgctgttacttcagagagctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgattgtcctttctagatgcagtttgaactacaaacctgctgttacttcagagagctcc 380

                                                                       
Query: 61  accttcttactatccaatcaagttcttcatctcacagcatcaatgactgaacctttgacc 120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcattcttactatccaatcaagttcttcatctcacagcatcaatgactgaacctttgacc 320

                                                                       
Query: 121 aaccttcatgaaagatactcgtttggatttaataaaagtatctttcttgcttgagacctt 180
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 319 aaccttcatgaaaaatacttgtttggatttaataaaagtatctttcttgcttgagacatt 260

                                                                      
Query: 181 tgtagcttttaacccatgggtcctcaccagttttccatgccacttcaagtcatggatac 239
           ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 259 tgtagcttttaacccatgggtcctcaccagttttccatgtcacttcaggtcatggatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)