BAC Information

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BAC

Clone NameMSMg01-100H02
Chromosome5 (Build37)
Map Location 62,795,663 - 62,795,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100H02.T7 (MSMg01no100_h02.b1)MSMg01-100H02.TJ (MSMg01no100_h02.g1)
ACCAG316144AG316145
length763669
length of high quality
(start - end)
151 (148 - 298)190 (102 - 291)
definitionCHROMAT_FILE: MSMg01no100_h02.b1 PHD_FILE: MSMg01no100_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:18 2005CHROMAT_FILE: MSMg01no100_h02.g1 PHD_FILE: MSMg01no100_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTTTTTTTTTTTTCTTTTCTTTTTTTCTCACCCNCCCNCCNTC
ANNCNNNNCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGTTTTCTCCCCTGAATCATAGAATTTGTGAACAT
ATAGTGCACCAGACATAATACTAAATGAAATTCTCATTTATTATAAGCTT
AACCTTCTTGCAGACCTTATGGTTTTTGATATTTTATATTTTTATGCAAT
ATATACATATATATTTCTCTGCAATGATATATGCATATGACATATATGAC
TTATGTCCTAACATAGAAAAGTCATATGACACAGACTTAATAGGACACAT
TTTAGTCAATCTAAACATACCTATTTATATTATGTTTATCTCCTTGGCAG
TTGGATTTTTAAATTTTATTATTATTATTATTATCTGTTCTCATTTCATT
TTGGTGGCTAAAATCTCTTCAGGCATCCTGTATATAGAATATGTGGGACA
TAAGTCAGTATTTACAACTTTTTGCTCCTGGTAAATGGGTGGTCTGGACA
ATCCAACTATGTTTCTATCTGCTGACGTGTTCACTCCGCAGTTTCTCAGT
CTGTTTTTCACTATGCTTCTTGCCCAACCTGGCAAATTTTGTATTCTCTA
CACCTTGTGCCCATACAATTTGGTATATTCCAATTTTTTGACTTTTCAAT
TTCCTTGGAAAGTAATTTCCTTTACTTCCCATAATAAAGCATTGACTTCG
CAATCCTTTTTGA
GGCGGCCGCCATACGTACCCTTTAGGTGACCTATAGATGACACAAGGAAT
TCTCACCTGAGGAATACCGAATGGCTGAGATGCACCTGAAAAAAATGTTC
AGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGCAGATGCTGGT
AAGGATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGGACTGCAAA
CTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCATATTTTTTGT
TTAGTGCTACCTGAGGATCCTGCAATACCTCTTTTGTTCTACCTCCCCAC
CATGTTCCAACCAGTAAGAAGGACACATGCTTCTCTATGTTTATAACAAA
CTTATTTATAATAGGCGGAGGCTGGAAAGTACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGCGGTACATTTATATAATGGAGTATTACTTA
GCTACTAAAAAGAATGAATTTCTGACATTCCTAGGCAAATGGATGGACCT
GGAGGTCATCATCCTGTGTGAGGTAACCCAATCACAAAAGAACTCCCACC
ATATGCACTCACTGAAAAGTGGATATTATTCCTACAAACTTAAAATACCC
ACGATTATACACACCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_h02.b1 MSMg01no100_h02.b1 CHROMAT_FILE:
MSMg01no100_h02.b1 PHD_FILE: MSMg01no100_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:18 2005
         (151 letters)



>mm_chr5_62795463_62796013
          Length = 551

 Score =  269 bits (139), Expect = 6e-77
 Identities = 145/147 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatagtgcaccagacataatactaaatgaaattctcatttattataagcttaaccttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 347 catatagtgcaccagacataatactaaatgaaattctcatttattagaagcttaaccttc 288

                                                                       
Query: 61  ttgcagaccttatggtttttgatattttatatttttatgcaatatatacatatatatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 287 ttgcagaccttatggtttttgatattttatatttttatgcaatatatacatatgtatttc 228

                                      
Query: 121 tctgcaatgatatatgcatatgacata 147
           |||||||||||||||||||||||||||
Sbjct: 227 tctgcaatgatatatgcatatgacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)