BAC Information

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BAC

Clone NameMSMg01-100M14
Chromosome5 (Build37)
Map Location 123,954,187 - 123,954,398
singlet/doubletsinglet
Overlap geneLrrc43
Upstream geneIft81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31
Downstream geneB3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100M14.T7 (MSMg01no100_m14.b1)MSMg01-100M14.TJ (MSMg01no100_m14.g1)
ACCAG316383AG316384
length707691
length of high quality
(start - end)
247 (65 - 311)213 (41 - 253)
definitionCHROMAT_FILE: MSMg01no100_m14.b1 PHD_FILE: MSMg01no100_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:46 2005CHROMAT_FILE: MSMg01no100_m14.g1 PHD_FILE: MSMg01no100_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXCTATCCAAGAGAGGATCCGCGGAATT
CTCTTTCTCTCTTACTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTTCTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTTCTCTG
GCTGTCCTGGAACTCACTCTGTAGGCTGGCCTCAAACTCAGAAATCCGCC
TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCACCT
GGTGGAGGCCTTGAATTCTTGAAAGTGATGGCAGCTAACCATTGTGGTAC
TTGCTGAACACACGCACCCTTCTCATGGTTGGAAACACCCCCTATATGTT
GTTGTTGTCTAGATATTGAAACTGTAACTATATATCTGACACTGTGTATG
CCAAAGCTTGGGGTGATGTCTACATCTGGGATCCCAGCTCCTTTGGGAGG
TTGAGTTAAGTAGATCGCCAGAAGTTCCAGGAGAGCTCACGCCATAGAAT
GTCTTGTTTCCCCGATGGCGCAACAAGCGCTGGCTCTTTGCTTTAAAACT
GAATATCTTGAGTTAGACCCCGGGCACTCCTTACGGTGTAAAGACTATTT
CTTCTTTGGCATACCCACTCTCTGACATCCCTCTCCGTTTTTGGGCCCCC
GTTAAAT
CCAGTCAAACGAGAGTAGGTGACCTATAGATTGCTACGCGGAATTCACGG
CCCTGGGAGGGGTGGGTGTTCTCCAGTGTCGGCATCTGCTCCAGCAAACG
CCTGGTTTTGTGGTTCTTTCTCTCAGGATTCAAAGAAGGTAAAGAAATCT
CTCAAGAAAGGTAAGGCCTGCCAGCAGCCACAGAGGGCGGGCGGGGTGGG
GGCAGAGAGCCTGCCAAGGGGCCGTCCTGGATACAGAGCCTTACGGAATG
AAGCCAGTGATAATCTCTTCCATCTGGCACAGAAGCAAGTCTTGAATCTT
CTCTAGAGCCCCCGAGCACGGCTGTAGGTTGTGATGACGCCCCAAGGTGC
TGTGTGGAAACTGTTTTTATTTGAACCATGATGACCCATCTCTGTGACCC
CCACTTTTTGCACTTAGGAAAGCCTTCTATTCTTTCCTTACCTTTTACCA
GCCAACGCCCCGAATGCTCCACTTGTCAAACACTGCGCCTGACCTCCCCC
CCACATCCTCTCCGCCGCCCCGCCACTCGCCCCCCTCCCCTCCTATTCTT
ATTCTTTTCCTCGTGCCTTCTTCCTGTTTCTCTCACATTTATCCCAAACT
CTCCGTTTTATAACACATTACTTTCCTTTCTTCCCTATCTTCTCTCGCCC
ATCTCATTAAATCCTCTATTTTTTTCCCAACTCTCATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_m14.g1 MSMg01no100_m14.g1 CHROMAT_FILE:
MSMg01no100_m14.g1 PHD_FILE: MSMg01no100_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:47 2005
         (213 letters)



>mm_chr5_123953987_123954599
          Length = 613

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcacggccctgggaggggtgggtgttctccagtgtcggcatctgctccagcaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcacggccctgggaggggtgggtgttctccagtgtcggcatctgctccagcaaacg 260

                                                                       
Query: 61  cctggttttgtggttctttctctcaggattcaaagaaggtaaagaaatctctcaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggttttgtggttctttctctcaggattcaaagaaggtaaagaaatctctcaagaaag 320

                                                                       
Query: 121 gtaaggcctgccagcagccacagagggcgggcggggtgggggcagagagcctgccaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaggcctgccagcagccacagagggcgggcggggtgggggcagagagcctgccaaggg 380

                                           
Query: 181 gccgtcctggatacagagccttacggaatgaa 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 gccgtcctggatacagagccttacggaatgaa 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)