Query= MSMg01no101_a19.b1 MSMg01no101_a19.b1 CHROMAT_FILE:
MSMg01no101_a19.b1 PHD_FILE: MSMg01no101_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:07 2005
(244 letters)
>mm_chr5_50397165_50397808
Length = 644
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Plus
Query: 1 acttatgatttaaagaatccttactttctcaacaaatttctcacagcacccctgcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttatgatttaaagaatccttactttctcaacaaatttctcacagcacccctgcctggg 260
Query: 61 caatgtggaagtggctgttttactttaggaagatcccagccacactctaggcaggcagta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgtggaagcggctgttttactttaggaagatcccagccacactctaggcaggcagta 320
Query: 121 ggcaagacagaggaaacgaggacactcagtaccacatcccggaaggggagcacacatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ggcaagacagaggaaacgaggacactcagtaccacatcccggaaggggagcacacatatt 380
Query: 181 atagagttcactctgaccaaccagccatggggttgacagctcagaggtatccttttacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagagttcactctgaccaaccagccatggggttgacagctcagaggtatccttttacac 440
Query: 241 tag 243
|||
Sbjct: 441 tag 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no101_a19.g1 MSMg01no101_a19.g1 CHROMAT_FILE:
MSMg01no101_a19.g1 PHD_FILE: MSMg01no101_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:07 2005
(251 letters)
>mm_chr5_50550790_50551440
Length = 651
Score = 472 bits (244), Expect = e-138
Identities = 250/252 (99%), Gaps = 2/252 (0%)
Strand = Plus / Minus
Query: 1 cttattttctttgtacaagacaagttatgtggctttcctgtaatggaatca-tatggatg 59
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 451 cttattttctttgtacaagacaagttatgtggctttcctgtaatggaatcagt-tggatg 393
Query: 60 gagtctagataatgtaacagggatgttaaacagggaggggcaatccaaaagcaccgtgag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtctagataatgtaacagggatgttaaacagggaggggcaatccaaaagcaccgtgag 333
Query: 120 ggtgtactgtaaagataacaatgtggatgctgggaatctgcagttggcagtgctgagggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtgtactgtaaagataacaatgtggatgctgggaatctgcagttggcagtgctgagggt 273
Query: 180 cagccactctgctgattttatggagaaccagttcattgaatccccaaaatctaccgttgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagccactctgctgattttatggagaaccagttcattgaatccccaaaatctaccgttgg 213
Query: 240 aggttgtttttc 251
||||||||||||
Sbjct: 212 aggttgtttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
