BAC Information

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BAC

Clone NameMSMg01-101D13
Chromosome5 (Build37)
Map Location 35,975,923 - 35,976,171
singlet/doubletsinglet
Overlap genenone
Upstream gene0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3
Downstream geneHtra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101D13.T7 (MSMg01no101_d13.b1)MSMg01-101D13.TJ (MSMg01no101_d13.g1)
ACCAG316689AG316690
length853737
length of high quality
(start - end)
40 (175 - 214)249 (66 - 314)
definitionCHROMAT_FILE: MSMg01no101_d13.b1 PHD_FILE: MSMg01no101_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:21 2005CHROMAT_FILE: MSMg01no101_d13.g1 PHD_FILE: MSMg01no101_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCNCCCCNNNNCCTTTATTTAT
TNTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXCTCAAAAAAACCGC
GTAATTCACTATGTTTTCCTGTAAGGCATTAATACCCACAGAAATCTACC
TGTCTCTGTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG
CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGTCTCTTTA
TATAATAAAAATACAGACCCCAATTTCTTTGTTATATGTCTCACATTTTA
AAAACTCTGACTGCCCTCTTCTATCCTTCAACATTTCAAACCCTACTATC
ACTTGGTCACATTAATTTCATATCGTATTCTTTTTTTTCTCCCCCAGACC
TTCCTCAATACCCTTAAATTATTTTTTCTTCCCATCCCACCCCTTATTTT
ATTTTATTTTATTATATTATAAACAAATTTTTTATATATAAACATATTAT
AATTTCAAAATATAAAAAACACAAAAAACAAAAACAAAAAATAAAATCAT
ACATTAATATTTAAAACACTATAAATAAACATCACATATCTATAAAATTT
TCATTACTAATGCTTTTAATCAATTAATACTAATTATTTACACTCACTAT
CCTACTCATTTTCCATACCTCATATTCTAAACTCACACTAAATCACAAAA
CTCCATCTCTTCCACCCCACTCCCACTTAAATAATTATATTTTTATCACA
ACACTTTATATCACCTAAACAAACAACTATACTAATACTATAAAAATACC
TTCTCATCTATTTTTATCTAATATTTTCACAATCATCTTCTCCTCTATAC
CAN
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCTGGAATTCTCTCTCCTGTGGACCCCTGTGCATGACTGGG
AGGCAACTGAAGAGCCAGGATTCCTGGGGGAGGAGGCTGCCCTTGTCCCA
GAGCCAGTGCTGGTTGGTGCTGATTTACAAGATAGGTGGTGGGGGTTAGG
GGAGCCAAGGAATCCTGATGATTTCTGGGTGACTGGAATGGGGTTAGTGG
ATGGAGATTGCTGTCAGGCCACTGGATACCTAGTGAGGTCTTCCATACCT
GCTCTGTGCTCCCAAAGGCTTTTTTTTACACCAAGTTTGTCCCCTTTACC
TCTCCCCTTGGTCTCTCGCCCTGACTTTCCCTTCCTGGGTGTGCTCCAGC
TTTGTGTCACCATTTTCAGGACTTCTGTATTATGTGTCCCATGGGCAGCC
TGCTATTATATTCTCGGCGTGCCTCTGGTCTCTTGCTGTGTCTGTATGAT
TTGTGCTGCGAGCCAAATACCCTCCTGACTCTGCTCCTGTTCCTCTTTCT
CTGCATATCCCGAGATCCTGCCTTCTGTCATCTCTTTGCCTTTTTTTTCC
TGTTTGTACGTGTCCGATCTCATTCTTCTCTCGGTTTCCTCTTTGTTCTC
CTTTTCTTATAACTCTTTTTTCTTCTCCCCCTTCCCTACTCTTGCTTTAT
CTTTATGCTTTCTTCGTCTCCACTTAGTCTTTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_d13.g1 MSMg01no101_d13.g1 CHROMAT_FILE:
MSMg01no101_d13.g1 PHD_FILE: MSMg01no101_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:21 2005
         (249 letters)



>mm_chr5_35975723_35976371
          Length = 649

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctctcctgtggacccctgtgcatgactgggaggcaactgaagagccaggattcct 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 attctctctcctgtggacccctgtgcatggctgggaggcaactgaagagccaggattcct 260

                                                                       
Query: 61  gggggaggaggctgcccttgtcccagagccagtgctggttggtgctgatttacaagatag 120
           ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 261 gggggagaaggctgcccttgtcccagagccagtgctggatggtgctgatttacaagatgg 320

                                                                       
Query: 121 gtggtgggggttaggggagccaaggaatcctgatgatttctgggtgactggaatggggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtgggggttaggggagccaaggaatcctgatgatttctgggtgactggaatggggtt 380

                                                                       
Query: 181 agtggatggagattgctgtcaggccactggatacctagtgaggtcttccatacctgctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 agtggatggagattgctgtcaggccactggatacctagtgaggtcttcgatacctgctct 440

                    
Query: 241 gtgctccca 249
           |||||||||
Sbjct: 441 gtgctccca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)