BAC Information

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BAC

Clone NameMSMg01-102C21
Chromosome5 (Build37)
Map Location 84,303,073 - 84,303,607
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102C21.T7 (MSMg01no102_c21.b1)MSMg01-102C21.TJ (MSMg01no102_c21.g1)
ACCAG317397AG317398
length750683
length of high quality
(start - end)
595 (57 - 651)535 (74 - 608)
definitionCHROMAT_FILE: MSMg01no102_c21.b1 PHD_FILE: MSMg01no102_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:41 2005CHROMAT_FILE: MSMg01no102_c21.g1 PHD_FILE: MSMg01no102_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAACCCCNTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCAACTGAGAATACCGAATGGCTGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAAGGAAATGCAAACCAAAACAA
CCCTGAGATTCCACCACACACCAGTCAGAATGGTTAAGATAAAAAATTCA
TGTGATAGCAGATGCTGGCAAGGATATGGAGAAAGAGAAACACTCCTCCA
TTGTTGGTGGGATTTCAAGCTTGTACAACCACTCAGGAAATCAGTCTGGC
AGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATCCAGCAATACCT
CTCCTGGGCATATATTCAGAAGATATTCCAACTTGTAATAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAT
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAATACTACTCAGCTATTAAAAAGAATGAAATTATGAAATT
CCTAGGCAAATGGATGGATCTGGAGGGTATCATCTTGAGTGAGGTAACCC
AATCACAAAAGAAATCACATGATATGCACTAACTGATAAGTGGATATTAG
CCCAGAAACTTACAATACCCAAGATACAATTTGCAAAACACATGACACTC
AAGAAGACCAATGAGCAAAGTGTGGACACTTCGACCCTTCTTAGAATGGC

TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAACTTAACATTTAATCAAGAAAATT
TTGGTATTCCTCTGAAGGCAGAATTTCACTTGACTCAAACCACAAGTGGA
TATGTGTTGTCTGTAGTGAATAATGTTATCAAGTCTGATAAGATAGGCAG
AATTTTGTTACATCTAGGTAGAGTTTGGTTTTCATCATGTAGATCTGATT
TGAATATTTAACTTCCTTTTGGAAGAATCACTATTAAATTACTAGAAGTG
TTCTTAATTTTACTTCACTGATATTTGTTTAGAGACATATCTGGATGAAA
GGATATGATACAAATAATCTGTTCAAAATAGTCTCATGGCCCTGTTCCAC
CCTCCTTTAAAGCATCTGGTACCATTTCACATGTCAGGACCATTTGCCAA
ATGAGATGGGCCTGTTTTATTGATGAGATTGTTTTGTTCTCATGGTACCC
TTTTAATGGAAAACAGCATCATTGATTTAATAAAAAGGACACTGTGGGTA
GAAGACTTAACAATATGCTATTTCCTCTTCATCAAACAACAAACAGAATT
TCTAAGGGAAAATAACCAAAGTTGATATTTTCTATCTGGGGGACTGCTGG
ACAATGATGGCAGTGAGATTGTGCTATGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_c21.g1 MSMg01no102_c21.g1 CHROMAT_FILE:
MSMg01no102_c21.g1 PHD_FILE: MSMg01no102_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:41 2005
         (535 letters)



>mm_chr5_84302873_84303807
          Length = 935

 Score = 1021 bits (528), Expect = 0.0
 Identities = 534/536 (99%), Gaps = 2/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaactt-aacatttaatcaagaaaattttggtattcctctgaaggcagaatttcacttg 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgaacttaaacatttaatcaagaaaattttggtattcctctgaaggcagaatttcacttg 676

                                                                       
Query: 60  actcaaaccacaagtggatatgtgttgtctgtagtgaataatgttatcaagtctgataag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 actcaaaccacaagtggatatgtgttgtctgtagtgaataatgttatcaagtctgataag 616

                                                                       
Query: 120 ataggcagaattttgttacatctaggtagagtttggttttcatcatgtagatctgatttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ataggcagaattttgttacatctaggtagagtttggttttcatcatgtagatctgatttg 556

                                                                       
Query: 180 aatatttaacttccttttggaagaatcactattaaattactagaagtgttcttaatttta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatatttaacttccttttggaagaatcactattaaattactagaagtgttcttaatttta 496

                                                                       
Query: 240 cttcactgatatttgtttagagacatatctggatgaaaggatatgatacaaataatctgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttcactgatatttgtttagagacatatctggatgaaaggatatgatacaaataatctgt 436

                                                                       
Query: 300 tcaaaatagtctcatggccctgttccaccctcctttaaagcatctggtaccatttcacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaaaatagtctcatggccctgttccaccctcctttaaagcatctggtaccatttcacat 376

                                                                       
Query: 360 gtcaggaccatttgccaaatgagatgggcctgttttattgatgagattgttttgttctca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtcaggaccatttgccaaatgagatgggcctgttttattgatgagattgttttgttctca 316

                                                                       
Query: 420 tggtacccttttaatggaaaacagcatcattgatttaataaaaaggacactgtgggtaga 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 315 tggtacccttttaatggaaaacagcatcattgatttaataaaaaggacactgtggg-aga 257

                                                                   
Query: 480 agacttaacaatatgctatttcctcttcatcaaacaacaaacagaatttctaaggg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agacttaacaatatgctatttcctcttcatcaaacaacaaacagaatttctaaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)