Query= MSMg01no102_k02.b1 MSMg01no102_k02.b1 CHROMAT_FILE:
MSMg01no102_k02.b1 PHD_FILE: MSMg01no102_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:17 2005
(252 letters)
>mm_chr5_56906108_56906763
Length = 656
Score = 458 bits (237), Expect = e-133
Identities = 249/255 (97%), Gaps = 4/255 (1%)
Strand = Plus / Minus
Query: 1 tgcaggtatgtttaagtagaaagcaaactttttttatcatacaaatatggcatattattt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 455 tgcaggtatgtttaagtagaaagcaaactttttctatcatacaaatatggcatattattt 396
Query: 61 aaaaattatgtcaaacttactctctccacactgcaagtggagtaacaaacctggagagta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 395 aaaaattatgtcaaacttactctctccacactgcaagtggagtaacaaacctagagagta 336
Query: 121 catcacagattgttgaatatgttaatctgactcttgaaatctgctgctcattt----aaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 335 catcacagattgttgaatatgttaatctgactcttgaaatctgctgctcatttaaaaaaa 276
Query: 177 aaaaaaaaagatccctttgaaaataatgttgctcactgacaatgtactattcaacaactc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaaaaaaagatccctttgaaaataatgttgctcactgacaatgtactattcaacaactc 216
Query: 237 cagtagagactacta 251
|||||||||||||||
Sbjct: 215 cagtagagactacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 656
Length adjustment: 9
Effective length of query: 243
Effective length of database: 647
Effective search space: 157221
Effective search space used: 157221
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_k02.g1 MSMg01no102_k02.g1 CHROMAT_FILE:
MSMg01no102_k02.g1 PHD_FILE: MSMg01no102_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:17 2005
(393 letters)
>mm_chr5_56783210_56784002
Length = 793
Score = 721 bits (373), Expect = 0.0
Identities = 388/393 (98%)
Strand = Plus / Plus
Query: 1 aataatgtatagcagaaattatctcttcagaaattaagctcatagaaccagtacacttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatgtatagcagaaattatctcttcagaaattaagctcatagaaccagtacacttac 260
Query: 61 tatttcctaataaacacaactatttcaatacacaatcatatgttttaaaggaagaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcctaataaacacaactatttcaatacacaatcatatgttttaaaggaagaaggaa 320
Query: 121 aactatggtaatgtccaacattaagtaaaatgtaaaatttgtaatttgaatgtcacacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactatggtaatgtccaacattaagtaaaatgtaaaatttgtaatttgaatgtcacacgt 380
Query: 181 agataaacaaggccacagactttaaatagcaacacattagcttgtaaatacaatatagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataaacaaggccacagactttaaatagcaacacattagcttgtaaatacaatatagca 440
Query: 241 gtaaatctaataataagtaaataaataaaacaaaaaaatcggtagaagataacttagcct 300
|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtaactctaaaaataagtaaataaataaaacaaaaaaatcggtaaaagataacttagcct 500
Query: 301 ctaaaaggaccttccactttaagaaaatgtcactttattttccactcagaaagcactttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ctaaaaggaccttccactttaagaaaatgtcactttattttccactcagaaagcaatttc 560
Query: 361 ctactttaacaccccatgtctaactttgacatt 393
||||||||| |||||||||||||||||||||||
Sbjct: 561 ctactttaaaaccccatgtctaactttgacatt 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
