BAC Information

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BAC

Clone NameMSMg01-102K20
Chromosome5 (Build37)
Map Location 19,021,965 - 19,022,263
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102K20.T7 (MSMg01no102_k20.b1)MSMg01-102K20.TJ (MSMg01no102_k20.g1)
ACCAG317756AG317757
length706704
length of high quality
(start - end)
346 (66 - 411)298 (67 - 364)
definitionCHROMAT_FILE: MSMg01no102_k20.b1 PHD_FILE: MSMg01no102_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:20 2005CHROMAT_FILE: MSMg01no102_k20.g1 PHD_FILE: MSMg01no102_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCGGCGGAATTCTTT
GTTCAGTTTCGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAGTTCTTCATATATATTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACTGTGTCTTTTGCCTTGCAGAAGCTTTGTAGTTTCATGAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGATGTCCTATTCAGG
AATTTTTCCTCTGTGCCCTTATCTGCAAGGCTTTCCCCACTTTCTCCTCT
ATAAGTTTCAATGTCTCTGGTTTTATGCGAAGTTCCTCGATCCATTTAGA
TTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCAATATTTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGT
GTGTGGATTCATTTCTGGGACTTCAATTCTATTCCATTGCGCTACTTGTC
TGTCTCTATACCAGTACCTTGCAGTTCTTATCACCATTGCTCTGTAGTAT
AACTTTAGGTCCAGGCTGGTGCATTCTACCCGAGTTTTTTTTATCCTCGA
AAACAG
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCGAATCAAGTTTGGGCCCAGCTTTGCTGATGAGAATTAGAAA
AAGTCTTACTGTCTCTCTGCTTTTCTGAGTAGAGAATCTTAGAAATTAAT
TCTGTGGAGGAATGATGAAATCAAAAGATTCTAACATTTCCAGAAGGAGA
CGGCTTTTTGGATTCCAACAAAGTCCACTGGCTTCCATTCAGATGAATGC
AATTTCATATTCCCATTTGAGAATAACTATGAGACAAGATTAGTTTTAAA
AGTGTTTATTTTAATATATTTCCAACATATTGAAGAGAGTGATTGAAACA
TGTAGCTGTGCTTTCACCAGGAGATTATGATGGTAGCAAGGGATGCCTGG
ACCATGGCAGGCCACTGCTGCCAGCACCACCTTCCTTTACATTAGAGTTG
GGTACCAGATCACAGATATTTTTAGCTAACATCAGACTATTATATAGCTA
GTACCCAATGATGTTTTCTAAAGGAATCAAATAATTGATAAATGAGTCAT
TCTCCATTAATCCAATTCATTGAGGTTTCCAGAAACAATAGTCTTCCTTG
TGAGAAAATATGGACATTATATATGGTACACATGATAACGCAAAATTATT
CATAAAACTCTATCCCATGGAATCTCATTCAAGCGTCCAGAACTCCAACA
CAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_k20.g1 MSMg01no102_k20.g1 CHROMAT_FILE:
MSMg01no102_k20.g1 PHD_FILE: MSMg01no102_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:20 2005
         (298 letters)



>mm_chr5_19021765_19022463
          Length = 699

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttgggcccagctttgctgatgag-aattagaaaaagtcttactgtctctctgcttttc 59
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 gtttgggcccagccttgctgatgagtaattagaaaaagtcttactgtctctctgcttttc 440

                                                                       
Query: 60  tgagtagagaatcttagaaattaattctgtggaggaatgatgaaatcaaaagattctaac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgagtagagaatcttagaaattaattctgtggaggaatgatgaaatcaaaagattctaac 380

                                                                       
Query: 120 atttccagaaggagacggctttttggattccaacaaagtccactggcttccattcagatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atttccagaaggagacggctttttggattccaacaaagtccactggcttccattcagatg 320

                                                                       
Query: 180 aatgcaatttcatattcccatttgagaataactatgagacaagattagttttaaaagtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatgcaatttcatattcccatttgagaataactatgagacaagattagttttaaaagtgt 260

                                                                      
Query: 240 ttattttaatatatttccaacatattgaagagagtgattgaaacatgtagctgtgcttt 298
           ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttattttaaaaaatttccaacatattgaagagagtgattgaaacatgtagctgtgcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 699
Length adjustment: 9
Effective length of query: 289
Effective length of database: 690
Effective search space:   199410
Effective search space used:   199410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)