BAC Information

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BAC

Clone NameMSMg01-102N02
Chromosome5 (Build37)
Map Location 4,356,712 - 4,357,205
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102N02.T7 (MSMg01no102_n02.b1)MSMg01-102N02.TJ (MSMg01no102_n02.g1)
ACCAG317860AG317861
length683707
length of high quality
(start - end)
489 (47 - 535)441 (77 - 517)
definitionCHROMAT_FILE: MSMg01no102_n02.b1 PHD_FILE: MSMg01no102_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005CHROMAT_FILE: MSMg01no102_n02.g1 PHD_FILE: MSMg01no102_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCCTATTCCGAGAGGATCCGCGGAATTCTTCATATACATATGCCATCAG
ATGGGTGTCACAGTCATGTCCTGAAGAGATTTCTTTGCCTTATCTAGATG
TTCTAATACAAATGGTCACAGGAGAGGAGCAGGACCAGGGCCTGGACACA
CCCCACTCGAGGGGGGGCAGGAAGGCCTGAGGACCCAGGGCTGGCTACAC
CCCAGTTACTTTCACTTCAATCCTAGTCACTTTGAGCTAGCAGAATTTTG
TCCCATGGTGTGGTCTCTGCTTCAGGCAGACATGGAGCAAAACAATTTTT
GATATCAACTCTAATTTCCTTTCTTCCAATTCTAATTTCCCTTCCCACTC
AAAAATTTATTTGTTACAATATATTCTGAGAGTTGTCACTGGAAAACAGC
AAAGAAATAGAGAACAAATAAGCCATCATATGTATTAGCTCAGACCTCTG
CCCTACAACTCAGAACAGCTGGGTTCATTCATGTCTCATGAGACAAGCAT
TTATAATACTGTCTGAGTCTATTTCATAATACAGAACAGCATATCTCATA
GTGGATACTTATAAAAAGAGTACATTTATTTCTCAAAGTTCTGCACACTG
AGAAAGTCCACCATCCATGTTCTGGGATCTGGACAGTTCTTTCCTTCTGT
GTCATCCATGGCCCACGGTTACAAGGATAGGAT
AACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCAACTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATCTCCCGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGATCCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTACCCCACAACCTACGATACCCAAGATATAAGATACCATTTT
CCTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_n02.b1 MSMg01no102_n02.b1 CHROMAT_FILE:
MSMg01no102_n02.b1 PHD_FILE: MSMg01no102_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:31 2005
         (489 letters)



>mm_chr5_4356512_4357405
          Length = 894

 Score =  841 bits (435), Expect = 0.0
 Identities = 478/495 (96%), Gaps = 7/495 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatgggtgtcacagtcatgtcctgaagagatttctttgccttatctagatgttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcagatgggtgtcacagtcatgtcctgaagagatttctttgccttatctagatgttctaa 635

                                                                       
Query: 61  tacaaatggtcacaggagaggagcaggaccagggcctggacacacccca-ctcgaggggg 119
            |||||| |||||||||||||| |||||||||||||||| |||||||||  | |||||||
Sbjct: 634 cacaaattgtcacaggagaggaacaggaccagggcctggccacaccccatgt-gaggggg 576

                                                                       
Query: 120 -----ggcaggaaggcctgaggacccagggctggctacaccccagttactttcacttcaa 174
                ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggggaggcaggagggcctgaggacccagggctggctacaccccagttactttcacttcaa 516

                                                                       
Query: 175 tcctagtcactttgagctagcagaattttgtcccatggtgtggtctctgcttcaggcaga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcctagtcactttgagctagcagaattttgtcccatggtgtggtctctgcttcaggcaga 456

                                                                       
Query: 235 catggagcaaaacaatttttgatatcaactctaatttcctttcttccaattctaatttcc 294
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatggagcaaaacaatttttgatatcaactctaatttcctttcttccaattctaatttcc 396

                                                                       
Query: 295 cttcccactcaaaaatttatttgttacaatatattctgagagttgtcactggaaaacagc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cttcccactcaaaaatttatttgttacaatatattctgagagttgtcactggaaaacagc 336

                                                                       
Query: 355 aaagaaatagagaacaaataagccatcatatgtattagctcagacctctgccctacaact 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaagaaatagagaacaaataagccatcatatgtattagctcagacctctgccctacaact 276

                                                                       
Query: 415 cagaacagctgggttcattcatgtctcatgagacaagcatttataatactgtctgagtct 474
           |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||
Sbjct: 275 cagaacagctgggttcattcacatctcatgagaaaagcatttataatactgtctgagtct 216

                          
Query: 475 atttcataatacaga 489
           |||||||||||||||
Sbjct: 215 atttcataatacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 894
Length adjustment: 10
Effective length of query: 479
Effective length of database: 884
Effective search space:   423436
Effective search space used:   423436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)