Query= MSMg01no103_i18.b1 MSMg01no103_i18.b1 CHROMAT_FILE:
MSMg01no103_i18.b1 PHD_FILE: MSMg01no103_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:30 2005
(270 letters)
>mm_chr5_62587365_62588033
Length = 669
Score = 476 bits (246), Expect = e-139
Identities = 261/268 (97%), Gaps = 6/268 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgca---ttccatttaaaggtcatgagtactcttcaaaaaggctgttgtttct 61
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttgcaggat--catttaaaggtcatgagtactcttcaaaaaggctgttgtttct 261
Query: 62 ggtggtctgggtagcctctacagcacagttttttactagcaaagcctcctgggtgaagga 121
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 ggtggtctgggtggcctctacagcacagttttt-actagcaaagcctcctgggtgaagga 320
Query: 122 agaaaatggagtgctctctaaagctgatggattctcagtgtagtctcaaattatgcaaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaatggagtgctctctaaagctgatggattctcagtgtagtctcaaattatgcaaat 380
Query: 182 cgccatcatgtcataagggcagcccactggatacaagtaaaaaagcatttgagtgacaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgccatcatgtcataagggcagcccactggatacaagtaaaaaagcatttgagtgacaag 440
Query: 242 gttgccagaataagaaaagggattactg 269
||||||||||||||||||||||||||||
Sbjct: 441 gttgccagaataagaaaagggattactg 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 669
Length adjustment: 9
Effective length of query: 261
Effective length of database: 660
Effective search space: 172260
Effective search space used: 172260
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no103_i18.g1 MSMg01no103_i18.g1 CHROMAT_FILE:
MSMg01no103_i18.g1 PHD_FILE: MSMg01no103_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:30 2005
(236 letters)
>mm_chr5_62752627_62753262
Length = 636
Score = 447 bits (231), Expect = e-130
Identities = 234/235 (99%)
Strand = Plus / Minus
Query: 1 catcaacacctccagggttgtttcttaaaccaacattcaagatccatgaaaggggatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catcaacacctccagggttgtttcttaaaccaacattcaagatccatgaaaggggatgat 376
Query: 61 ccaagaccacagaaggaagacctccatctcctttgcattccttgtctcaggtcattctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccaagaccacagaaggaagacctccatctcctttgcattccttgtctcaggtcattctta 316
Query: 121 gaatagtgattcttgggtttggagaggcatgtaactgcaatcaaaaaaattaactgcaag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaatagtgattcttgggtctggagaggcatgtaactgcaatcaaaaaaattaactgcaag 256
Query: 181 aagaaattgttgcagtattctatggggaaagttgcttttcttttaattgttattc 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagaaattgttgcagtattctatggggaaagttgcttttcttttaattgttattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
