TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGACGAAGCCGCG
GAATTCTTCATTTTCCCATCTACGGATTGTCTTCATTTGTTGAAAATAGC
CTCTGATCCTGAGATGTCACTCACTGCTCTAGCTACAGCCTGAATCTCGA
GAGCACTATAGGAACTGTTGCAAAACCCATGTCAGTTATTCCAGGCTTCA
GTTCATAAATATACCACAAAGTTGGCGTGTTCTGAACATGACACTTAGAA
CACTTCAAAAGTTTACATTTGGCACTTAGCCAAGTCATACAAACTTTAAA
TGTCAGTGGAAAATGTTCAATTATATGAATGCAGGGTGCGATGAGTTCTT
CCTACATGTTGGAAGCTGATCAAAACAGTATCGCATGAGTTTAGTAGGGC
TCCATTTCTCATAAAGCAATGCCATTCTCGGCCTTCAATGAAATTAAGTG
TCCTTTTTTTCCCCTCTTTATTTCATGGAAATTGAAGTGAGGTAAGTTGT
AAATCTCCCCTCTCATTCCAAAAATATCCGTTTTCTTCAACCAAGAAATA
CATAGTTAGAAGGGAGTAAATTTTAGATTTTAAAAATCCCAGGAGAGATT
CTGAATTGTAAACAGTTATGCCATTATTATTATATTTTTATCTGTTATAT
CATTGTGTTTATTGTATAGTAGGCTATGTTATAGAAAGCCTAAACATTTC
CN

CTTCGATGATGCTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
CGAGGTAACACATTCCCAAAGAAACTCACACAATATGTATTCACTGATAA
GGGGATATTAGCCCCAAACCTAGGATACCCAAGATAATAGATATAATTTG
CTA

Query= MSMg01no104_k04.b1 MSMg01no104_k04.b1 CHROMAT_FILE:
MSMg01no104_k04.b1 PHD_FILE: MSMg01no104_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:58 2005
         (471 letters)



>mm_chr5_81098966_81099836
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acggattgtcttcatttgttgaaaatagcctctgatcctgagatgtcactcactgctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acggattgtcttcatttgttgaaaatagcctctgatcctgagatgtcactcactgctcta 612

                                                                       
Query: 61  gctacagcctgaatctcgagagcactataggaactgttgcaaaacccatgtcagttattc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gctacagcctgaatctccagagcactataggaactgttgcaaaacccatgtcagttattc 552

                                                                       
Query: 121 caggcttcagttcataaatataccacaaagttggcgtgttctgaacatgacacttagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caggcttcagttcataaatataccacaaagttggcgtgttctgaacatgacacttagaac 492

                                                                       
Query: 181 acttcaaaagtttacatttggcacttagccaagtcatacaaactttaaatgtcagtggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acttcaaaagtttacatttggcacttagccaagtcatacaaactttaaatgtcagtggaa 432

                                                                       
Query: 241 aatgttcaattatatgaatgcagggtgcgatgagttcttcctacatgttggaagctgatc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgttcaattagatgaatgcagggtgcgatgagttcttcctacatgttggaagctgatc 372

                                                                       
Query: 301 aaaacagtatcgcatgagtttagtagggctccatttctcataaagcaatgccattctcgg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaacagtatcgcatgaatttagtagggctccatttctcataaagcaatgccattctcgg 312

                                                                       
Query: 361 ccttcaatgaaattaagtgtcctttttttcccctctttatttcatggaaattgaagtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccttcaatgaaattaagtgtcctttttttcccctctttatttcatggaaattgaagtgag 252

                                                              
Query: 421 gtaagttgtaaatctcccctctcattccaaaaatatccgttttcttcaacc 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtaagttgtaaatctcccctctcattccaaaaatatccgttttcttcaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)