Query= MSMg01no105_c24.b1 MSMg01no105_c24.b1 CHROMAT_FILE:
MSMg01no105_c24.b1 PHD_FILE: MSMg01no105_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:44 2005
(508 letters)
>mm_chr5_21621461_21622368
Length = 908
Score = 924 bits (478), Expect = 0.0
Identities = 490/494 (99%)
Strand = Plus / Minus
Query: 15 gaattcatttgctatcaacacttgactggaatgttttaaagctatttatagcctttatat 74
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattcatttgctagcaagacttgactggaatgttttaaagctatttatagcctttatat 849
Query: 75 ctctactatttaagtgaatatgcacacagttcactgcagcaatgttaatgtatttgatta 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ctctactatttaagtgaatatgcacacagttcactgcagcaatgttaatgtatttgatta 789
Query: 135 gaaggcaatgcaacaactttggggtgtggcatattatatagtatatatgccaatatttcc 194
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 788 gaaggcattgcaacaactttggggtgtggcatattatatagtatatatgccaatattttc 729
Query: 195 tttctgaaatctgtaaatttaataaacaaaccatatgaagtatattatcctctaagcctc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttctgaaatctgtaaatttaataaacaaaccatatgaagtatattatcctctaagcctc 669
Query: 255 ttggaattaagagcctacatagctttcttcccaaggaaggagcaacttgtcagtgttcat 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttggaattaagagcctacatagctttcttcccaaggaaggagcaacttgtcagtgttcat 609
Query: 315 tagacattaataatatctctggttttgaatggccttgatgtaatgtcagaagctataaag 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tagacattaataatatctctggttttgaatggccttgatgtaatgtcagaagctataaag 549
Query: 375 ttgcttagtttatgtcacctagcaaaactgataggaagaaatgaacatttcttatgaatt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgcttagtttatgtcacctagcaaaactgataggaagaaatgaacatttcttatgaatt 489
Query: 435 ttgaaaagttcctggctccaggagatacttagagtttcctccaggtgtgtataggatgct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgaaaagttcctggctccaggagatacttagagtttcctccaggtgtgtataggatgct 429
Query: 495 tacggagtggctgc 508
||||||||||||||
Sbjct: 428 tacggagtggctgc 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_c24.g1 MSMg01no105_c24.g1 CHROMAT_FILE:
MSMg01no105_c24.g1 PHD_FILE: MSMg01no105_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:44 2005
(533 letters)
>mm_chr5_21466051_21466984
Length = 934
Score = 888 bits (459), Expect = 0.0
Identities = 510/535 (95%), Gaps = 15/535 (2%)
Strand = Plus / Plus
Query: 1 cagtctgaccggatcagcagaagaactatcagtggagcagccaacattgaccttgggatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 201 cagtctgaccggatcagcagaagaactatcagtggagcagccaacattgatcttggaatg 260
Query: 61 aaagaaaacgtgatgcagattatctcagagcaacgcacactggccgtgcttctcagaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaacgtgatgcagattatctcagagcaacgcacactggccgtgcttctcagaggc 320
Query: 121 catttaatccc-gagaaggctcttactgaaatatgtcactctggaagagctgttccctaa 179
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 catttaatccccgagaagggtcttactgaaatatgtcactctggaagagctggtccctaa 380
Query: 180 gtgacatcatatattacctttaagttatatattcttcataaagagcccccaaaaggccat 239
| ||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 381 gggacat-------------taagttatatattcttcataaagagccccaaaaaggccgt 427
Query: 240 atagaagctattttctctagtgttatgagaaacagaaaaatgaacacgggaaaggttgag 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atagaagctattttctctagtgttatgagaaacagaaaaatgaacacgggaaaggttgaa 487
Query: 300 ataattccaaatttaactttggctcatttttttt-aattgtcaagccaataaaattagaa 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 ataattccaaatttaactttggctcatttttttttaattgtcaagccaataaaattagaa 547
Query: 359 taaagaatgtctacttaatcccaacccttagccccctcatcaatctgtgcagtaacacct 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taaagaatgtctgcttaatcccaacccttagccccctcatcaatctgtgcagtaacacct 607
Query: 419 gctctctttaggacactttataaacaattccacaagtttttaacttggagaatctccaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gctctctttaggacactttataaacaattccacaagtttttaacttggagaatctccaac 667
Query: 479 acacacccaatataaaaataaaataaaatacactcattgctatttttccctcaca 533
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acacatccaatataaaaataaaataaaatacactcattgctatttttccctcaca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space: 483252
Effective search space used: 483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
