BAC Information

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BAC

Clone NameMSMg01-105K19
Chromosome5 (Build37)
Map Location 139,225,385 - 139,225,689
singlet/doubletsinglet
Overlap genenone
Upstream geneBcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
Downstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105K19.T7 (MSMg01no105_k19.b1)MSMg01-105K19.TJ (MSMg01no105_k19.g1)
ACCAG319966AG319967
length706708
length of high quality
(start - end)
483 (40 - 522)304 (70 - 373)
definitionCHROMAT_FILE: MSMg01no105_k19.b1 PHD_FILE: MSMg01no105_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:23 2005CHROMAT_FILE: MSMg01no105_k19.g1 PHD_FILE: MSMg01no105_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTCTC
AACTGATGAACCTCGAATGGCTGAGAAGCACCTAAAGAAATGTTGAGCAT
CCTTTGTCATCAGAGAAATGCAAATCAAAATGACCCTGAGATTCTACCTC
ACAGCAATCAGAATGACTAAGACAAAAAATTCAGGTGACAGCAGATGCTG
GCAAGAATGTGGAAAAAGAGGAACACTCCTCCATTGCTGGAGGGATTGCA
AGCTCTGGAAATCAGTTTGGCAGACCCTTGGAAAATGGACATAGTAGTAA
CTGAGGACTCAGTATATGCCTCTCCTGGACATATACCCAGAAGATGCTAC
AACATGTAATAAGAACACATGCTCTTCTATGTTCATAGCAGCCATATTTA
CAATAGCCAGAAGCTGGAAACAACTCAGATGTCCCTCAACAGAGGAATGG
ATACAGAAAATATCGTATATTTACACAATGGAATACTACTCAGCTATTAA
AAACAATGACTTCATGAAATTCGCAGGCAAATCTAGAAGATATCATCCTG
AATAAGGTAACTCAGTCACAAATGACCACACATGGTATGTACTCACTGAT
AAGCGGTTATTAGTCATAAAGTGGGGTATATCCACGATACAATTACAGGA
CCTCTTGATATTCCAGAGGAAGGAAAACCAAGTATACATGATTCACCCCT
TCTTAA
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGGGCTGGCATAGTCCCTTTTACTCATT
GAGCTGTGCAGACATGCATCTGGAAGGTACATGTGCATTATCTATGTGTA
CACTGCAGATTCTCCTGGCATGTGTGCACCTGCCTGGGGCCTCTGCAGCA
CACACATGCATACCGCATACACCCTGGGCAGGTGCACATGTATCTGTTTG
TGCTGGAATGTGCTGCATAGGTGTATATACATACCTAGCAGACTCTCTTG
GTGCGTTCATGTGATTATCAGAACCCAAGGAAGGCATTATGATAGCATTG
AGCTTTAGAAATATTTCCACCTGCAAATTGGTATCACAAATAAAAACACA
ATTTTTAGGCGATAAAAGAACCCGAAAGGCAAATTACAGCCTACTTATAA
ATGCACACAGACAGCACCATAACCTATTATAATCTGTAAGAATCTGCTGC
GGATGCACTCGCAGGACAGCCAGCGTTGAAGTCTTCGCTTATTAGACAGC
GAAATGACTCGAATTGAATGTACCGAGTTTTCCCTCTGAGAATGTATAAC
AGAACCATATAATATGCCCCAACTGAATATGTCCTGTTTTTTACGCATAA
CTTACTGAACGCAACGGTAAAGTCAACCCGATTCTTCCCTTTTTACAAAA
CTGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_k19.g1 MSMg01no105_k19.g1 CHROMAT_FILE:
MSMg01no105_k19.g1 PHD_FILE: MSMg01no105_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:23 2005
         (304 letters)



>mm_chr5_139225185_139225889
          Length = 705

 Score =  497 bits (257), Expect = e-145
 Identities = 293/305 (96%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagggctggcatagtcccttttactcattgagctgtgcagacatgcatctggaaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaagggctggcatagtcccttttactcattgagctgtgcagacatgcatctggaaggta 446

                                                                       
Query: 61  catgtgcattatctatgtgtacactgcagattctcctggcatgtgtgcacctgcctgggg 120
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 catgtgcattatctatgtgtgcactgcagattctcctggcatgtatgcacctgcctgggg 386

                                                                       
Query: 121 cctctgcagcacacacatgcataccgcatacaccctgggcaggtgcacatgtatctgttt 180
           ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct: 385 cctctgcagcacacacatgcatatcgcatacgccctgagcaggtgcacatgtatctgttt 326

                                                                       
Query: 181 gtgctggaatgtgctgcataggtgtatatacatacctagcagactct-cttggtgcgttc 239
           | |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 325 gcgctggaatgtgctgcataggtgtacatacatacctagcagactcttcttggtgcattc 266

                                                                       
Query: 240 atgtgattatcagaacccaaggaaggcattatgatagcattgagctttagaaatatttcc 299
           |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 265 atgtgattctcagaacccaaggcaggcattgtgatagcattgagctttagaaatatttcc 206

                
Query: 300 acctg 304
           |||||
Sbjct: 205 acctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 705
Length adjustment: 9
Effective length of query: 295
Effective length of database: 696
Effective search space:   205320
Effective search space used:   205320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)