BAC Information

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BAC

Clone NameMSMg01-106F17
Chromosome5 (Build37)
Map Location 105,201,941 - 105,202,672
singlet/doubletsinglet
Overlap genenone
Upstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199
Downstream geneLOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106F17.T7 (MSMg01no106_f17.b1)MSMg01-106F17.TJ (MSMg01no106_f17.g1)
ACCAG320464AG320465
length1,3071,304
length of high quality
(start - end)
630 (84 - 713)499 (127 - 625)
definitionCHROMAT_FILE: MSMg01no106_f17.b1 PHD_FILE: MSMg01no106_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:40 2005CHROMAT_FILE: MSMg01no106_f17.g1 PHD_FILE: MSMg01no106_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCTATTTATGTNTTACATTGGGCGCTATGACTCCTATGGGAGAGGATCC
GCGGAATTCATTATTACTTGAATGCCCTTTAAAGAGCTGGGAAGTGGTGG
CGCACACCATATTTTTCCTTAACTTGGGAAGCAGAGACAAGTGGATTTTT
GAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TATACAGAGAAACAATGTCTTGAAAAACAACAACAAAAACAAATACAAAA
AAAATAGAAAAGTAAACAGAAAGGAAAATGAAAGGAGAAAAACAATGAAG
AAAGAAAATCAAAATGATGAAGACTAGGAGAGCATGATTTTTGACAGATA
CATTTCTCACGCTCTTTCTGAAGAGGATGACCATCACAGAAGAGTTCACA
CCAAGCCTGTGTGTGACTCAGGTCATTGTCTTGTGTTGTCTTTCATCAGG
TTGGATTGTGGAATTAGAAGAATAATTGCACATTTATTTCTAAACAACTT
CTCTTGCTTGTCAATATGAAAAATCACATTTGAGTAACTATTCAAAAAAT
AAAAAATGCATACATAATATTATAGGGTATTGATATTAGAATTATATATT
ACACTTAACAGACACTCCTGGGCAAAAATCTTAAATGTTGGGCTGGAGAT
ATGGCTCAGAGGTGAAGAGAACTGGCTGCTCTTCCAAAAGTCCTGAGTTC
AATTCCCAGCAACCATAGGGTTAGGTCACAGTCATGTATAATGAGATCAG
GAGTCCTCTCCTGACTTGCATACATTACATGCAGGCAATGCACTATATAC
ATAAAAAAATGAACTATCCTAAATTAAATATAATAACATCTTTTAAAATA
CTCTTAAATATTTACCAACCCCATTATCCCGAGCAAAAATGTGTGAAGAC
CCTAACCTGTGTTTTTTACTCAAAAGAAATTGAAATGCGTTCACTTTTTC
AACCTATTGGACTTTTTGTTTCATGAATCATTTATTGGCCATTATTTAAA
TTTCAAACCAAAATCTATTTCCGTTCGAATCTCTTAACCTCCCTTTTTAC
TTTTTTGGATCCCCCGGTGACTTTATGGGACAAAAAATTCTCTCTTTGTT
TCCCACAATAAAAAAATTTTTTTCGTGGAATTCTTTCAGGCCTGCGCGAG
TAACCTTTTTGTTTTTTTCTAATAAACCCGGGCTAACCTTGTGTGTGAAA
AAAGATTTTGAGACAATAACTCTTTCTTCTTCTCCTTTAATACTCATTCT
CATATAAAAACTTTTATATAGCAATACTATTTTNAATGGTCTATACTCTG
ATATGTC
NCCGTTCTTTTNTATTGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAGAGTTAACCTTAATTC
AATTTTATGTTGTCTGAATCTTGACAGTTGATTTTCCTTAGTATGCTTTT
TATATCCCTTGTGTCCCTAATGCTTTTCTTAAATTTACAGAGGTCTTCCT
CCCTTTGTGTTCTGAGTGCTGGGACTGAAGAAATGCACTTACATTTCCAG
CTTAACGCCTAAGAATTTCATGGTGCTAATATCTCTCTCTCCCTCTCTCT
GTCTCTCTCTCTGTCTCTCTCTCTGTGTCTCTCTCTTTCTGTGTGTCTGT
GCCTTTCTCTTTCCCTCCCTGTCTCCCCTAGCAAAAGAATTTAATCCTTA
TTTTATTTGTAGGAATATTTTGTCTATACGCATGGTTTTGTACAGTGTTC
ATGCCTGTTGAGCAGGAAGGCAAGGAGGTTGTGTTAAAGCCCCTGAACCT
GAGTAATATGTAGTATTGAGATGTTTTGTGTCCTGGGAATGAAACATGGA
TGCTCTTGAAGAAACTTCTTTCTGCTTAGATGCTGTGGTTTTTCCATCCC
CATTTTTTTTCTTTTTTTTTGCATAGGCTATTGGCCACCCCCAATTTTCT
ATCCTTCATGTTTTCTACCCAAGGCATTCTAGGTCACTTTGGGCATCCAG
TTTTCTTGAGGGGCTCCCTTTAGGTATCAGACCGGGAAGTTAACCTTACT
AATAAATGATACTTGTAATCTCTTGCTCTTTGAATTTGTCATCCTGGTGC
GTACTTGTGGGAATCTAATGCCTTCCAAATTATTGTCTAAATTTTTTAAA
ATGTATTACAACTTTTGTTGAAAATTTTCAGTGCTATAAATTTGGTCCAA
TCAGCCCCTTTTCTATTTGTGACAAAAATTTTTTTAGCTTTTTATTACTC
TTTAAAATCCTTTTATAAAAGTAAAAATGTTACCTCTAAAATTGGTATTC
TTTTATGTTAAAAATACCTATAAAATTCATTGGGGTTCTCCTTATCTTAT
TTTTCCAAGCTTCTATATGTTCCTTTGTGTTCTTATTTCCCCTAAGTGTA
TGTTTATAACCGTCGTTAATAAATAATATTGTGAGAAAAACATTGTCTCC
TCCTACAAATGTGACTAATAGCTCTCGGTTTCTTCCTCGTTAATAAGTGT
GTTTAAAGCTCCTTGTCTTTCTTATCTGCTAAACATTTTTTGTATGTTCT
CTTTAATAAATACACTGCGTTATCTTCTTCTTAAATAGACTGGTATTTCT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_f17.b1 MSMg01no106_f17.b1 CHROMAT_FILE:
MSMg01no106_f17.b1 PHD_FILE: MSMg01no106_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:40 2005
         (630 letters)



>mm_chr5_105201914_105202943
          Length = 1030

 Score =  630 bits (326), Expect = 0.0
 Identities = 582/744 (78%), Gaps = 126/744 (16%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctgggaagtggtggcgcacaccatatttttccttaacttgggaagcagagacaagtg 60
           ||||||||||||||||| ||||||| | |||||||  |||||||||||||||| ||||||
Sbjct: 759 gagctgggaagtggtggtgcacaccttttttttccagaacttgggaagcagaggcaagtg 700

                                                                       
Query: 61  gatttttgagttccaggccagcctggtctacagagtgagttccaggacagccagggctat 120
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gactttcgagttccaggccagcctggtctacagagtgagttccaggacagccagggctat 640

                                                                       
Query: 121 acagagaaacaatgtcttgaaaaacaacaacaaaaacaaatacaaaaaaaata-gaaaag 179
           ||||||||||||||||    ||||||| ||||| |||||| | |||||||| | ||||||
Sbjct: 639 acagagaaacaatgtc----aaaacaaaaacaacaacaaa-agaaaaaaaa-aggaaaag 586

                                                                       
Query: 180 taaacagaaaggaaaatg-aaaggagaaaaacaatgaagaaagaaaatcaaaatgatgaa 238
           |||| | ||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 585 taaaaacaaaggaaaatgcaaaggagagaaacaatgaagaaagaaaataaaaatgatgaa 526

                                                                       
Query: 239 gactaggagagcatgatttttgacagatacatttctcacgctctttctgaagaggatgac 298
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 525 gagtaggagagcatgatttttgacagatacatttctcatgctctttctgaagaggatgac 466

                                                                       
Query: 299 catcacagaagagttcacaccaagcctgtgtgt--------------------------- 331
           |||||||||||||||||  ||||||||||||||                           
Sbjct: 465 catcacagaagagttcatgccaagcctgtgtgtgtgtgtgtatgtgtgtgcctgtgcgcg 406

                                                                       
Query: 331 ------------------------------------------------------------ 331
                                                                       
Sbjct: 405 tgcgcgcgcctgagcgcgcgtatgtttgtgtgcctgtacatatatatatatgcaaacaca 346

                                                                       
Query: 332 ------------------------gactcaggtcattgtcttgtgttgtctttcatcagg 367
                                   ||||||||||||| ||||||||| |||||||| |||
Sbjct: 345 cataaaataggaaagcaggaaagagactcaggtcattatcttgtgttatctttcataagg 286

                                                                       
Query: 368 ttggattgtggaattagaagaataattgcacatttatttctaaacaacttctcttgcttg 427
           ||||| ||||||||||||| ||||||||||| ||||||||||||||||  ||||||||| 
Sbjct: 285 ttggactgtggaattagaaaaataattgcacgtttatttctaaacaaccactcttgctta 226

                                                                       
Query: 428 tcaatatgaaaaatcacatttgagtaactattcaaaaaataaaaaatgcatacataat-a 486
           |||||||| ||||| | |||||| ||||||||| |||||||| |||||||||||| || |
Sbjct: 225 tcaatatg-aaaattatatttgattaactattc-aaaaataagaaatgcatacat-atca 169

                                                                       
Query: 487 ttatagggtattgatattagaattatatattacacttaacagacactcctgggcaaaaat 546
           ||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tt---gggtattgatattacaattatatattacacttaacagacactcctgggcaaaaat 112

                                                                       
Query: 547 cttaaatgttgggctggagatatggctcagaggtgaagagaactggctgctcttccaaaa 606
            ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 111 gttaaatgttgggctggagagatggctcagaggtgaagagaactggctgttcttccaaaa 52

                                   
Query: 607 gtcctgagttcaattcccagcaac 630
           ||||||||||||||||||||||||
Sbjct: 51  gtcctgagttcaattcccagcaac 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)