BAC Information

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BAC

Clone NameMSMg01-106M21
Chromosome5 (Build37)
Map Location 69,778,095 - 69,778,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106M21.T7 (MSMg01no106_m21.b1)MSMg01-106M21.TJ (MSMg01no106_m21.g1)
ACCAG320789AG320790
length7051,286
length of high quality
(start - end)
429 (60 - 488)653 (91 - 743)
definitionCHROMAT_FILE: MSMg01no106_m21.b1 PHD_FILE: MSMg01no106_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:46 2005CHROMAT_FILE: MSMg01no106_m21.g1 PHD_FILE: MSMg01no106_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAATTAANAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATTTGTGACATTGTTCTATATTATACTTGTA
AAGAAAGCTACCCCATTCAGCATCTGTAATTTTCCTATACTTGGTAAGTG
TGTTTGTTTGGTTCGTTTGTTTGTAGACAAGGTCTTATACATTCAGGCTA
CGAATTTGCTATGTAGTTCCGGCTAGCTTGTAACTCACCATCCTTCTGCC
TCAGCCTCCCAAGTACCGGGACTGTCACCATCACATACAATGAACTTTTC
CAGAGAATGGAACATGGAGGCAGTATTGTCTACAGAACAATCTAAGGAAA
CAGTGCTGAAAAAACTTGGCCTCAGCCAAGTGATTTTGCTGCTTAACATA
CAGTCTGCTAATAGTTCTGTTTTCACTTTTTATGTGCAGTGGAATGAAAT
GATTTACGTGCAGTGACTTTGTACAGAAGATGCCTATGCTCTCACATCAT
TTTATCATACTGACAAGCTATTGATGAGTTAAAATTCATATCATCCTCAG
TGATGGATCAGTGTACTCCATATATCTTTTCCCTTAAAAATTACAAATAA
AACACTCAACATTACTCCAAGACCCTCTGTTCTTCATATGACAAATAAGC
GTTATTCTTTTTTGCTTATTGAAATGAGTATTCACCTTTAGACCTGCATC
ACCTT
CCGCTTTTTTTTTTACGATGGNAGGCGTGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAGGACATCCATTTCT
GTAATGAGGCATCAAGGCTGCCCGTCTGCCCAGGCATAGTTGCTCATACC
TTCCATCCCTTTACCCTGGAGACAGAGGCCAGTGGATCTCTGCTAGCCTT
AGGTCCGTCTGGTCTACATAGCTCTAGACCATCCATGACCTCTACCTTCA
AAATAAGAAGAGTAGACTGTGGTACTCAATGGTGGTCCTCAAATTGTGTG
GGCGTATGTTATTTTGCCAGTACCATAGAAATGGACCATCTAGAGACTGC
CATATCTGGGGATTCATACCATAATCAGCTTCCAAACGCTGACACCATTG
CATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTG
TGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CTATTGGATGGATCACACGGCCCCCAATGGAGGAGCTAGAGAAAGGAACC
AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTACGAACT
AACCAGTACTCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGA
TGGTCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTCGTCCTGCAAACT
TTATCTGCCTCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGGTT
GGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAATAAATACCTAAT
AAAAATTTTAAAAAGAAATAGAAGTTATTAATTAACCCAGAATTTGGATA
TGTAAGGAATCTGCAGTCCTAGAAGGGAGACTTGTCAGAAAGTGAAGTGG
CCCTCACAATATCTGATCCAGAAAAAATGGAAAGTACAACTAGAACAGGT
TACCTGGGTCAAAATCCGAGGGATTTTCTTGGATGGGTTCCAAAATTCCC
TTCGATAGGCCCATTGTGACCCTTTTTAGAAAAAGGTGTATTTAAAAAGC
CCCCCCTGGTTGGAATTTTCTTTGAAAAGGGTCAAAAATGGTTTTGTTTT
TGAAAACCCTCTTTTTATGTAGTGTGGTGTGAATCTATTAAAAATAATTT
TGGTGTGGTTATCCTCTCTCTTCATATTGTTGTAATCTTAGGGTCTTATA
TTTAAAACCTCCTCCTTCTTGTTTTCCTTCTTATCTCTCTTCTTCTTAAA
AGTTTCTTACTATTTTATTTCCTTCCTACATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_m21.b1 MSMg01no106_m21.b1 CHROMAT_FILE:
MSMg01no106_m21.b1 PHD_FILE: MSMg01no106_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:46 2005
         (429 letters)



>mm_chr5_69777891_69778719
          Length = 829

 Score =  729 bits (377), Expect = 0.0
 Identities = 413/425 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgtgacattgttctatattatacttgtaaagaaagctaccccattcagcat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcatttgtgaaattgttctatattatacttgtaaagaaagctaccccgttcagcat 264

                                                                       
Query: 65  ctgtaattttcctatacttggtaagtgtgtttgtttggttcgtttgtttgtagacaaggt 124
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ctgtaattttcctatacttggaaagtgtgtttgtttggttcatttgtttgtagacaaggt 324

                                                                       
Query: 125 cttatacattcaggctacgaatttgctatgtagttccggctagcttgtaactcaccatcc 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 cttatacattcaggctacgaatttgctatgtagttccagctagcttgtaactcaccatcc 384

                                                                       
Query: 185 ttctgcctcagcctcccaagtaccgggactgtcaccatcacatacaatgaacttttccag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 ttctgcctcagcctcccaagtaccgggactgtcaccatcacatacaatgaactttttcag 444

                                                                       
Query: 245 agaatggaacatggaggcagtattgtctacagaacaatctaaggaaacagtgctgaaaaa 304
           |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct: 445 agaatggaacatggaggcagtattgtatacagaacaagctaaggaaacagtgctgacaaa 504

                                                                       
Query: 305 acttggcctcagccaagtgattttgctgcttaacatacagtctgctaatagttctgtttt 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttggcttcagccaagtgattttgctgcttaacatacagtctgctaatagttctgtttt 564

                                                                       
Query: 365 cactttttatgtgcagtggaatgaaatgatttacgtgcagtgactttgtacagaagatgc 424
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 565 cactttttatgtgcagtggaatgaaatgatttatgtgcagggactttgtacagaagatgc 624

                
Query: 425 ctatg 429
           |||||
Sbjct: 625 ctatg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)