BAC Information

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BAC

Clone NameMSMg01-107F02
Chromosome5 (Build37)
Map Location 89,074,524 - 89,074,792
singlet/doubletsinglet
Overlap genenone
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneGrsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107F02.T7 (MSMg01no107_f02.b1)MSMg01-107F02.TJ (MSMg01no107_f02.g1)
ACCAG321162AG321163
length1,3151,309
length of high quality
(start - end)
268 (136 - 403)276 (132 - 407)
definitionCHROMAT_FILE: MSMg01no107_f02.b1 PHD_FILE: MSMg01no107_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:02 2005CHROMAT_FILE: MSMg01no107_f02.g1 PHD_FILE: MSMg01no107_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGAAATTTCTNNAATCATGCGCCCTATAGANCAGTATGGGAGAGGATCC
GCGGAATTCCCTCCTCCTGCTTCCCCTTTAAAGTGCCTGGNAGGAGTAGG
TATTACAGTCAACTCCCTTTAAAGGCCCTAAGAGGTAATTTAAGGGGTTA
ATCATGGCAGAATCCCAGGACAGGCTGACTGCCCTGTGATCCAGCTGCTG
TGCTGTGTGGTTTCCCTTAACTGCCTTCTACTTTATAGCTCAGTGGCCGT
TCACCAGGAGCTCCCTTCCCACCACTCCAGAAACTCGCATTACAAACACC
TGTGCCTTTCTTCCAGCGGCTTCTTTAGTTTAACGTTTTCCTCTTGGATT
CTGTGCTTCCCATCCTGCCAAAAGAAAATAATAGCTCAGCCATTAAGTCT
TCTGTATTTTAAACTGTGATACCATCACAGGTTTCCTCCACAGAGTCTCG
GCCTGATTATTATGCGCCCTCCTTACCCCCACTCCCCACTTCCCTTACCT
TCCCCTCCCTCCTTCCCTTTCTGTTTTAGAGATTGGATTTAATTTCCAAT
GCCCTTTCTCATACTCTACACCCAGTTATTATTAAATAACTTTAATACCG
TTTATAAGTATATATTTCTGGATCATTTTTTACTTTCTGAATTTAACTTT
ATCTACTCTGATTGTCCTCTTCTTTGTTCTTCAATATAAGTTCTTCTCTT
GTCAATCATTCCTTGCTCTTGTCTTTTTTTCTGATTATCTTGCCTTTTCC
TTCCTTATATATTTACATTACTTTCCCTCTTTGTCACGGTATTCTTCTTC
TGTACCTCTATCTAATTTTCCCTGTTATACTTCCCTCTCGTCCTCTCTCT
TTCTTTCTCCTACGCTTCTTTCCTTCTTCCTTTCTTCATTTTCTTTCTTC
TATTTCTCTCTCTCTCCCTCTTTCCTTTCCTCTTTTCCTACTCTGTCCTT
CTCTCCTATTCCTCGCAACCTTTATACCTACCTTTTCCTCTTATCTCTCT
CCATTTTCTCTTGTTTATCTACTCTTTCCTTTGTTTTCTCTAACTTTTCT
CACTTTTCTCATTTTCTTCCTTCTGCCTTTATATATCCTATCTTCTCATT
CCTCTTTTTATCTCTCCCATTCTTCCTCTCTAACTATACTTACTCTACTC
ATTCCATCATCTTTACAACATCTCCTTCCTCCCTCTCCATCTTCTTTCTC
CTTCTTTCTACATTTTCATTCTTGCTTTCTTGCTTACCTCTTTCTACTTC
ACTCTCCATTACACCTCATCTATCCATATCTCTTCATACACTAGACTCTA
CCTTCTCTTCTATCT
CCAGTCTTTTTNAACAGCATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAGGTGCACGAAACCGAAT
GGCAGAGAAGCACCTGCCCTTTTGATCACCATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGATACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGATAGAACCCACCATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGCACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTTAGTGAGGTAACACATTCACAACGGAACTCACACAATATGTACTTCCT
GATAAGTGGATATTAGCCCTAAACCTAGGATATCCAAGATATAATATACA
ATTTCCTAATCACATGAAATTCAACAAAAATGAAGATTGAATTGTGGACT
CTATGCCCCTCCTTATAAGTGGTAACAAAACTCCCTTGTAAGGAGTCTAC
TGACACAAAGTTTGTAGCCTGACACTTATGGCTGGATTTTGTTATACACT
GCCTTTATCACGGAATCCACTCCCCATATTCATGCCACCCAACCGCCTGA
CTCCTCTGTCATATACCTAGTCAGTATCTTGTTGGTAAGTGCCCCAGAAT
TGTATTGGTCTCCTTGGTGATACCTATGCTGGTGTTCCTAGCAAACTTCC
TAAATTGGCATGGTCCCCCTTCTCTGCTTATATGCATGGTACTTACCTGG
CTCCCCCCTCATGCATGCATCCTCAGATACAAGTTTCCTCTAGCCCCCTT
ATAGGGGATATATCTAATCCCTCATTATGTGGGAATCCACCTTTATGGCA
ATTCACTCCAATTCCCTCTCGGACACCTCCTTGAACTTCTAACCTCTGTA
ATTTGTAATCTCATAAACTAGGGACTCTACTGTCGCTTCTCTCATCGTGC
TAAATAAATAAGTGCTCCTCTATTTGTTACCACTCTCATAGTCTATTCTC
TCCTCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_f02.b1 MSMg01no107_f02.b1 CHROMAT_FILE:
MSMg01no107_f02.b1 PHD_FILE: MSMg01no107_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:02 2005
         (268 letters)



>mm_chr5_89074324_89074993
          Length = 670

 Score =  493 bits (255), Expect = e-144
 Identities = 265/269 (98%), Gaps = 2/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatttaaggggttaatcatggcagaatcccaggacaggctgactgccctgtgatccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taatttaaggggttaatcatggcagaatcccaggacaggctgactgccctgtgatccagc 410

                                                                       
Query: 61  tgctgtgctgtgtggtttcccttaactgccttctactt--tatagctcagtggccgttca 118
           ||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||
Sbjct: 409 tgctgtgctgtgtggtttcccttaactgccttctactttatatagctcagtggctgttca 350

                                                                       
Query: 119 ccaggagctcccttcccaccactccagaaactcgcattacaaacacctgtgcctttcttc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 ccaggagctcccttcccaccactccagaaactcgcattacaaacacctgtggctttcttc 290

                                                                       
Query: 179 cagcggcttctttagtttaacgttttcctcttggattctgtgcttcccatcctgccaaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagcggcttctttagtttaacgttttcctcttggattctgtgcttcccatcctgccaaaa 230

                                        
Query: 239 gaaaataatagctcagccattaagtcttc 267
           |||||||||||||||||||||||||||||
Sbjct: 229 gaaaataatagctcagccattaagtcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 670
Length adjustment: 9
Effective length of query: 259
Effective length of database: 661
Effective search space:   171199
Effective search space used:   171199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)