BAC Information

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BAC

Clone NameMSMg01-108D24
Chromosome5 (Build37)
Map Location 84,692,886 - 84,693,404
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D24.T7 (MSMg01no108_d24.b1)MSMg01-108D24.TJ (MSMg01no108_d24.g1)
ACCAG321747AG321748
length1,411708
length of high quality
(start - end)
---519 (80 - 598)
definitionCHROMAT_FILE: MSMg01no108_d24.b1 PHD_FILE: MSMg01no108_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:02 2005CHROMAT_FILE: MSMg01no108_d24.g1 PHD_FILE: MSMg01no108_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTAGTATTTNGTGATTGTTTGTGTCTGGCGTCTTCCTTGTAATTGTA
TCTATCGATGCTTCNATGTATATGTGTTCGTGAGTCTGTTGTTCTGTTTG
TGTGGCATGTGATGTCGCTACACATGTGACTCGATTGATTATATTATATA
GTGAGTACTTCTATCTCGCATCTCTAGTAGTGTTAGTTAGCTGTACATGT
ATTGTCGAGTGACTTCTGATTGTAGGTGTTATGTTGAGATGATCGCGATA
GTAGATTGTGACGATAAGATCGCGACGTGGAGAGCGATGACGGTAACGAT
GCACGAACGACGTGATATGTACGGCTCAGTGATAGTGACGATCTGCGATG
CATAGTACTGNATGTAGCAGACGACAGCAGATCCGCGCGATCGACGCATG
TATATAGGCGCTCGTCTGAGTACGCTTGTGATGTCCTGTGCTGACTGCTC
TGCCGTGTGGCTGATCTCGTGTCCTGTAGTATGTGTATTGTTGTGCGACG
TCTGAGCTGTCTGCGCGNTCGATGTTGCTGTGTGTCGCTATTGTGCGTCA
CTGATGTGTCTAATGCTCTCTGTGGCCAGCTGTCTGCTGTATGCCTAGCG
ACTGATCGCGTGTTGTGTGACGCGTGAGTGCGCGTTGTAGCTGGGAGTAG
GTGACTCTCGCATACTGATGTGCGTGTGTGTGTGGTGACAGATAGCAGGC
TAGTGAGTTGTGTANTATGTTAGTGACTCCAGTAGATGTAGGCGACGCGA
TGGTGACGAGTGGTTCGCGCTGTGACGCGGCGCATACGTGCTGCCTAGAG
TGCGTTCAGTGCGTTCGCAGCACCGGAGCTGATTGTGTGNTAGNATGTGA
GCTGCGCTGGACCGTGCCGATCATAGCTCNCGCAGTNGNTGTTGCACTGC
CCATGCATGGATGTAGTGTGNTACACACATGCCATTACTGATATATACTA
GTCCAAACATGCGNCTACTGTGGNCACGAGTGCACTGATGAGCTGTACTG
ATGGCATGTGAGACGCGACGCCTCGCAGACGGTANTGATCTGCACGATCT
GTGCTGCTGTTAGCATAGTGCGCAATGTAGTGTCTCGAGCCACACCCTAG
CGCACACGCGCTGGTCGTATCCTGTATACGTAGTGTCGGGTCACCGCTAT
CGCTGATGATGCCGAGCGACTGATGATGGACAGAGAATCTCGCGACAGCA
GAGCCTACATACTATCGCGGCCCGAGCCGGTGTACGGTGTGACGTGTGCC
AGCGCGGTGTGGATATCTGAGCNTAGGACAGTGCGGTCTGATGTATGTAG
CGCAGGCTATCAGGACACGTGCAAGCAGCCACGTGTGGATGTGCNCGGCT
CGAGATCNGGTANANAGCGCTCGTGTATTCACGCTGTCGTTGGCTGANTA
ACTCTGTGCTG
TCCCCACGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTATACTTGCATTCATTC
AGCAAAATTTACGTTTTAATATTTAATTCAGAAAATCCCAATAGGGAACT
AAGTATTCCTGGATACTCAGACATTTGGATAAAACACACCTGTCAACAAA
TATGCAGGGCAGGAATTTCTTTCATTAACCTATTTCCTGTCATTCTTTCC
ATCTGTGGTTACACTGGAATTTTAATTCTGTTCACACTCTGCTATTCCAG
GGAAAGTGGCCTGAAGCAGACAGCAAGAGGCGAGCACTAAATCGAGCACG
TAAATCACTTCCTCTCTAGTGCCACAGTCAATTTAAAGAGCACCCTGGCA
TTAATGCCTAGAAAGAATATACTGTCGAGCCGACACAGCAGAGGGACTCT
ACTTCAGATTACAGCATTGTCCAGGTGACTGTGCGCAATTACAATTAACC
TTAGCCTGCTGCCAACAATGCCCTGTGATAAGCAGCTAGGCATGTGATGC
CTTTAGGAAAACATTCAGGGTAACATGAAAGTGGTTTCTGAGCTCTAAGA
ATATTCAAAGATTGTTTTCAATTAAATTATGTCACAACTTTAAATTTTTC
ATGGGATTGAATGTGTGTACCTTTTTTAAAAAAATAATCATTGTGTCTTA
CATAGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d24.g1 MSMg01no108_d24.g1 CHROMAT_FILE:
MSMg01no108_d24.g1 PHD_FILE: MSMg01no108_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:03 2005
         (519 letters)



>mm_chr5_84692686_84693604
          Length = 919

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctatacttgcattcattcagcaaaatttacgttttaatatttaattcagaaaatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctatacttgcattcattcagcaaaatttacgttttaatatttaattcagaaaatccc 260

                                                                       
Query: 61  aatagggaactaagtattcctggatactcagacatttggataaaacacacctgtcaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagggaactaagtattcctggatactcagacatttggataaaacacacctgtcaacaa 320

                                                                       
Query: 121 atatgcagggcaggaatttctttcattaacctatttcctgtcattctttccatctgtggt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggcagggcaggaatttctttcattaacctatttcctgtcattctttccatctgtggt 380

                                                                       
Query: 181 tacactggaattttaattctgttcacactctgctattccagggaaagtggcctgaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacactggaattttaattctgttcacactctgctattccagggaaagtggcctgaagcag 440

                                                                       
Query: 241 acagcaagaggcgagcactaaatcgagcacgtaaatcacttcctctctagtgccacagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcaagaggcgagcactaaatcgagcacgtaaatcacttcctctctagtgccacagtc 500

                                                                       
Query: 301 aatttaaagagcaccctggcattaatgcctagaaagaatatactgtcgagccgacacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttaaagagcaccctggcattaatgcctagaaagaatatactgtcgagccgacacagc 560

                                                                       
Query: 361 agagggactctacttcagattacagcattgtccaggtgactgtgcgcaattacaattaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagggactctacttcagattacagcattgtccaggtgactgtgcgcaattacaattaac 620

                                                                       
Query: 421 cttagcctgctgccaacaatgccctgtgataagcagctaggcatgtgatgcctttaggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttagcctgctgccaacaatgccctgtgataagcagctaggcatgtgatgcctttaggaa 680

                                                  
Query: 481 aacattcagggtaacatgaaagtggtttctgagctctaa 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacattcagggtaacatgaaagtggtttctgagctctaa 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)