TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAAATCACTTTAGTAAATTTGATTAATGTCTCCTTACATCACA
TAGATATTTTCTACAGTGCATATAAGCACATATATTTTAGAATATACTGA
AACTTAAAAATGTAAATTAAAAAAAAAACAAAAACCTCTACCAACTTCAA
ATTAAAAAACACATTTATTTTAGAATTCTCTAGGATACTCGCAATTTCCT
GTATTCCCTACTCATGATGTCCATATGTTAGCATCTTACAAATTTGTATG
ACAATAATGAGGAGAAAATAAAATTTGTAAGGAAAAAAAAAAGACAGTTT
TGTCTTAGACTACTTATTAACAAATGCCTGGGCCACAAACTGTGGCTTAT
TCCCAGAATAACGTATTTAACACATTCAAAATATTTTATGTTTTGTACAT
TTTTAGTTACCCCTTTATCTATTTACTTAGCATCTTCCTAAATATCTCCC
TTAGCATATGTGCCAGCATCTGTCCCTGAATCTGTTTATTCTCCTAATAT
TTCATAGAATACTCTCTTTTTGAAAAGTCTCACCTCATATTTTCTTCCTC
AGCTCATTTGTCATACACATTATTTAATTGACAGATGATGTTTATAAGAG
AGTCTCAAAATTTGGGGCACTAATAACAACTAAATATCTCATTTAAAATA
TATAAAGT

ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTTACCAGGAAGAGGTAGGCGAAACATC
ACCCCAGCAATTGTGTTCCTCTTTTCTTGCCTTTGGGAGGGCCTCAGCAA
ACCTAGCCCTTTCTGAGCTTCCTAAAACTTGGAAGTTTTATTTGCTTCTG
AGTTGTAGGATCCTCCATCCTCCTTATAGGAAAAAATGTATGAGAATTTT
GCTTCCTATAAAAACCCAGCAATGTTATATGTGTAGTTTTTTTTTTTATT
TTGTTTTGTTTTAATCTCATGTCTGTCCCCAGCTGCAGATAGTTTTTGTT
TGAAATTCTAGTGATTCTTGAGAGTGAATAAAAGAAAGAGCTCCTGAGAG
GACCTAGGGCAGATGCTGCTCCTGCTGCACCTGCTTTTGTTATCACAGGA
TTAAATGAGCAATGCTCTTGTCAATGGAGCAAGTTTGTGGATTTATTTGT
GTCAAAGGGCACTGATGGACATACATTGTTGCAAGGAGAAAAACAAGTGC
ATAATTTAGCATTCTTAGTGATTAGGTAAGGTAAGGTTATCTGAATTTAT
CTGAAGGCCAAGCCAAATGAAATGTTGTTTTTGATTCCTTTTTGGGAATA
CAAAAATTCCATGTTTCAAACTAATATTTATAGATTTTGCCAGTTGCTTT
TAT

Query= MSMg01no108_g08.b1 MSMg01no108_g08.b1 CHROMAT_FILE:
MSMg01no108_g08.b1 PHD_FILE: MSMg01no108_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
         (639 letters)



>mm_chr5_126312553_126313590
          Length = 1038

 Score =  271 bits (140), Expect = 1e-76
 Identities = 505/668 (75%), Gaps = 96/668 (14%)
 Strand = Plus / Plus

                                                                       
Query: 17  tctccttacatcacata-gatattttctacagt-gcat---ataagcacatatattttag 71
           ||||||||||||||| | || ||||||||| || | ||   |||| ||||||||||||||
Sbjct: 220 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 277

                                                                       
Query: 72  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaacaaaaacctctaccaacttca 130
           ||||||| ||||||| ||||||| ||||  ||||      ||| ||||||||| ||||  
Sbjct: 278 aatatacagaaacttgaaaaatggaaatggaaaa------aaatacctctaccgactttg 331

                                                                       
Query: 131 aattaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattccct 190
           |||||||||||||||||||||||||||||||||||||| | ||||||||| | || ||||
Sbjct: 332 aattaaaaaacacatttattttagaattctctaggatagttgcaatttcccgcataccct 391

                                                                       
Query: 191 actcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaaaa 249
           || |||||| ||||||| ||||||||||||| |||  |||||| |||||| |||||||| 
Sbjct: 392 acacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaat 450

                                                                       
Query: 250 taaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t--------- 287
           |||  |||||||    ||||||||  | |||||         ||  ||  |         
Sbjct: 451 taacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaatg 505

                                                                       
Query: 288 ---------agactacttattaacaaatgcctgggccacaaactgtggcttattcccaga 338
                    |||||| |||||||||||||||| |||||||| || |||||  ||||  ||
Sbjct: 506 acgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgga 565

                                                                       
Query: 339 ataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c-ctt 396
            |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | |||
Sbjct: 566 ctaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctctt 625

                                                                       
Query: 397 t-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctgt 454
           | ||| | ||  |||||||||||||| || |||||||||||||| ||  ||||||||| |
Sbjct: 626 tcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatcttt 684

                                                                       
Query: 455 ccctgaatctg--tttattctcctaatatttcatagaatact-ctctttttgaaaagt-- 509
           ||||||||||   |||||||||      ||         ||| | |         |||  
Sbjct: 685 ccctgaatctccttttattctc------tt---------actgc-c---------agtgt 719

                                                                       
Query: 510 ctcacctcatattttctt-cctcagctcatttgtcatacacattatttaattgacagatg 568
           |||||||| |||||| || |||||||||||| |||||| || |||||| |||||||| ||
Sbjct: 720 ctcacctcctatttt-ttgcctcagctcattggtcatagactttattttattgacaggtg 778

                                                                       
Query: 569 atgtttataagagagtctc---aaa-at-ttggggcactaataacaactaaat-atctca 622
           ||| |||||||||| ||||   | | |  ||||||||||| || ||||||||| | ||||
Sbjct: 779 atgcttataagagattctctctacagaccttggggcactattatcaactaaatga-ctca 837

                   
Query: 623 tttaaaat 630
           ||||||||
Sbjct: 838 tttaaaat 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space:   646612
Effective search space used:   646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)