BAC Information

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BAC

Clone NameMSMg01-108I16
Chromosome5 (Build37)
Map Location 144,685,813 - 144,786,794
singlet/doubletdoublet
Overlap genePms2, 4930526H21Rik, AU022870, Ocm
Upstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1
Downstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108I16.T7 (MSMg01no108_i16.b1)MSMg01-108I16.TJ (MSMg01no108_i16.g1)
ACCAG321961AG321962
length704704
length of high quality
(start - end)		629 (41 - 669)538 (71 - 608)
definitionCHROMAT_FILE: MSMg01no108_i16.b1 PHD_FILE: MSMg01no108_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:26 2005CHROMAT_FILE: MSMg01no108_i16.g1 PHD_FILE: MSMg01no108_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,786,170 - 144,786,794)(144,685,813 - 144,686,350)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGAGCAACCATGTAGTCAAGAGGTGGCTGGAGTCTTTTCTGTATCTGGG
TTTGGTTTAGTACTCTGCCCCATCACTTAACAGGTCCTTATGGCCACATC
TTAAAAAAATTCTAGAGATACACGGTGTCGGTGAGTGGCTGAGAATGTGT
GCTCTTCCCATTTCTCTGTCACCGTGGCTCACATCTTGTTTCCTCTGTTC
GGCCAGGTAGAAAATGAGCATCACGGACATTCTGAGCGCTGATGACATTG
CAGCGGCCCTGCAGGAATGCCAAGGTGACTGGGGACTGGAGGAGCAGGCC
ATGGTGGCACTGGGGCAGAAGAAGAGCAAGTGTCAGGGAAGCTTGGACTC
CGGAGTGAGATCTGTCTCAGAATAAAAACAAGGGCATGTAGCTGGAGCTC
AGTTGATGATAAGGTGTCTGCCCATATGAAGACCTGGGCTCCATCCCAGC
ATTTCATAGACAAGTGATGGACACCCGTACTCCTCCATCCCCAGCATTTC
ATAGACAGGTGATGGACACCTGTACTCTTCACACTAGGGAGATGGAGGCA
GGAATATCAGGAGTTTGAGATCATTCCTGGCTTCAGAGGGATCTTGAGGC
TTACTGGGGCTACTTGGATTCTTGTCTCAAAATAAGACAAACTTACAAGT
AATA

TGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCCTCCTTATCTGAGCCTTCTCAGTGC
AGGGATCATAGGGTGTGGCATCTGCTCAGCATGGGTGGGCATCTTTGATG
GAGCAGCAGAGCTGGGTCACAGATGTGCATACATCAAGACTTCATTTATA
TCCCCTTTAGGATGGGTTCTGGCCAGTGTTGCTGTATTTTATTTGCAGTT
TGCCCTTTGCTTTGTGGACTGCCTGTTCACGTGAAGATAACCCTCCTGTT
CCTGCTCAGCACACTCCCTGATACTTTTTTCTGTTCCTCTCTGCTAGGTA
ACTTAGTAAAGCTGCATACTGCAGAACTAGAAAAGCCTGTGCCAGGAAAG
CAAGATAACTCTCCTTCACTGAAGAGCACAGCAGACGAGAAAAGGGTAGC
ATCCATCTCCAGGCTGAGAGAGGCCTTTTCTCTTCATCCTACTAAAGAGA
TCAAGTCTAGGGGCCCAGAGACTGCTGAACTGACACGGAGTTTTCCAAGT
GAGAAAAGGGGTGTGTTATCCTCTTATCCTTCAGACGTCATCTCTTACAG
AGGCCTCCATGGCTCGCAGGACAAATTGGTGAGTCCCACGTACAGCCCTG
GTGACTGTATGGACAGAGAGAAAATAGAAAAAGACTCACGGTTGATCAGC
ACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_i16.b1 MSMg01no108_i16.b1 CHROMAT_FILE:
MSMg01no108_i16.b1 PHD_FILE: MSMg01no108_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:26 2005
         (629 letters)



>mm_chr5_144786102_144787130
          Length = 1029

 Score = 1178 bits (609), Expect = 0.0
 Identities = 621/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggagcaaccatgtagtcaagaggtggctggagtcttttctgtatctgggtttg 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattcaagagcaaccatgtagtcaagaggtggctggagtcttttctgtatctgggtttg 634

                                                                       
Query: 65  gtttagtactctgccccatcacttaacaggtccttatggccacatcttaaaaaaattcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtttagtactctgccccatcacttaacaggtccttatggccacatcttaaaaaaattcta 574

                                                                       
Query: 125 gagatacacggtgtcggtgagtggctgagaatgtgtgctcttcccatttctctgtcaccg 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 573 gagatacacggtgtcggtgagtggctgagaatgtgtggtcttcccatttctctgtcaccg 514

                                                                       
Query: 185 tggctcacatcttgtttcctctgttcggccaggtagaaaatgagcatcacggacattctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tggctcacatcttgtttcctctgttcggccaggtagaaaatgagcatcacggacattctg 454

                                                                       
Query: 245 agcgctgatgacattgcagcggccctgcaggaatgccaaggtgactggggactggaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agcgctgatgacattgcagcggccctgcaggaatgccaaggtgactggggactggaggag 394

                                                                       
Query: 305 caggccatggtggcactggggcagaagaagagcaagtgtcagggaagcttggactccgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caggccatggtggcactggggcagaagaagagcaagtgtcagggaagcttggactccgga 334

                                                                       
Query: 365 gtgagatctgtctcagaataaaaacaagggcatgtagctggagctcagttgatgataagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgagatctgtctcagaataaaaacaagggcatgtagctggagctcagttgatgataagg 274

                                                                       
Query: 425 tgtctgcccatatgaagacctgggctccatcccagcatttcatagacaagtgatggacac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtctgcccatatgaagacctgggctccatcccagcatttcatagacaagtgatggacac 214

                                                                       
Query: 485 ccgtactcctccatccccagcatttcatagacaggtgatggacacctgtactcttcacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ccgtactcctccatccccagcatttcatagacaggtgatggacacctgtactcttcacac 154

                                                                       
Query: 545 tagggagatggaggcaggaatatcaggagtttgagatcattcctggcttcagagggatct 604
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 153 tagggagatggaggcaggaacatcaggagtttgagatcattcctggcttcagagggagct 94

                                    
Query: 605 tgaggcttactggggctacttggat 629
           |||||||||||||||||||||||||
Sbjct: 93  tgaggcttactggggctacttggat 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_i16.g1 MSMg01no108_i16.g1 CHROMAT_FILE:
MSMg01no108_i16.g1 PHD_FILE: MSMg01no108_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:26 2005
         (538 letters)



>mm_chr5_144685613_144686550
          Length = 938

 Score = 1002 bits (518), Expect = 0.0
 Identities = 533/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcctccttatctgagccttctcagtgcagggatcatagggtgtggcatctgctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcctccttatctgagccttctcagtgcagggatcatagggtgtggcatctgctcagc 260

                                                                       
Query: 61  atgggtgggcatctttgatggagcagcagagctgggtcacagatgtgcatacatcaagac 120
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 261 atgggtgggcatctgtgatggagcagcagagctgggtcacagatgtgcatacgtcaaggc 320

                                                                       
Query: 121 ttcatttatatcccctttaggatgggttctggccagtgttgctgtattttatttgcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatttatatcccctttaggatgggttctggccagtgttgctgtattttatttgcagtt 380

                                                                       
Query: 181 tgccctttgctttgtggactgcctgttcacgtgaagataaccctcctgttcctgctcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccctttgctttgtggactgcctgttcacgtgaagataaccctcctgttcctgctcagc 440

                                                                       
Query: 241 acactccctgatacttttttctgttcctctctgctaggtaacttagtaaagctgcatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactccctgatacttttttctgttcctctctgctaggtaacttagtaaagctgcatact 500

                                                                       
Query: 301 gcagaactagaaaagcctgtgccaggaaagcaagataactctccttcactgaagagcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagaactagaaaagcctgtgccaggaaagcaagataactctccttcactgaagagcaca 560

                                                                       
Query: 361 gcagacgagaaaagggtagcatccatctccaggctgagagaggccttttctcttcatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagacgagaaaagggtagcatccatctccaggctgagagaggccttttctcttcatcct 620

                                                                       
Query: 421 actaaagagatcaagtctaggggcccagagactgctgaactgacacggagttttccaagt 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 actaaagagatcaagtctaggggtccagagactgctgaactgacacggagttttccaagt 680

                                                                     
Query: 481 gagaaaaggggtgtgttatcctcttatccttcagacgtcatctcttacagaggcctcc 538
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaaaaggggcgtgttatcctcttatccttcagacgtcatctcttacagaggcctcc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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