BAC Information

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BAC

Clone NameMSMg01-109D06
Chromosome5 (Build37)
Map Location 22,164,818 - 22,165,067
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067
Downstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D06.T7 (MSMg01no109_d06.b1)MSMg01-109D06.TJ (MSMg01no109_d06.g1)
ACCAG322447AG322448
length757723
length of high quality
(start - end)
---247 (90 - 336)
definitionCHROMAT_FILE: MSMg01no109_d06.b1 PHD_FILE: MSMg01no109_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:20 2005CHROMAT_FILE: MSMg01no109_d06.g1 PHD_FILE: MSMg01no109_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAACTTTATCAATAATTGCGGTCGCTTAACGACTCACTATTTCGCAG
AGGATCCGCGGAATTCTCACCTGATTCACATATAAAGGTAGAGAAGCACT
TTGTAAAAATGTTCTACATCTTTAATCATCCCGGAAATGCAAATCCAAAC
AAACCTGAGACTCCACCTCTTCCTAGTTAGAAAGGCTAACATCAAAAATT
CATGTGACCGTTTATGCTGGCGTACACGCGTAGAATGACGACCCTTCCTC
CACTGTTGTAGCCAGTGCATATTTCGCCCTTTCCCCCGTCTTTTCGTCCG
CTGTTCCCCCACAATCCTGGCCATCGTATCCCCGCATAACTTTAGATTAT
ATTTAAGCCCAAATTTCCATAACATTTTTTACATACTACATAACATATAC
GAACCGAACTCTCTCTCAAAACCTTTTTTTATTATTACCAACCACCACCT
TTCTTCCATCGCCCTACCAATCTACCCCTTTTTCCTCATCATTTCCTCTT
TACCCCTCCTTTCCAATATCCTTTTTATTTAACTACACATACCCCCACTC
TTAGCATTCTATGCATTTCCTCTGACCCCCTTTTTTCCCTTTTCTCCCCC
TCCCCCCAATACCCTTACATCCCCTTTTTCCCCCTTCATTATCCTCTTCA
ACAACCCCCCCTTTCCTTTTTCGAACATTTCTGTATTTTCTCTTCTCTCC
TACCTAATTCCCGATTCCCCCTCTTCCCCCTTTTCCCCCCCCCCTTTTCC
TTTCCCC
NATTATTTTTNTTNTCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTCTATT
TAAGCCACAAGAGCAACAGGGAGAAGCAGAATGTAATTATCCAAATTAGA
AGTTTTCTCTGACACTGAGGTCACCATCTCTGCTATTTGTGGAAGTGCCA
AGGGATATTTATTGATCACATGCAGCCAAGTATACTGCTTTATGTCTCTG
CTGATGGACAACCCCCTTAGGCACACAGCCTCTAAATACTACAGCAGTGA
AAAATGACATGGCCAAAAATGTTCTTCAGCATTTCATAAAGGCAGCCCCA
CATCTTGTGTTCCTGTCTCTGGCTTGAAAGAGGACTCGGTCAAACCATTA
GACTAGCTACCAAGTAATGGAAGGAGGAAAGTGCGAGGGGTAGTGTTCAT
AGCATATGGTAGGAGTGGTTTTACAGTTATTTAATTTGATCTTGAATCTG
AAGGTTTGGGAAACATTCTGGCCATTCATTCCCTTCATGCTCTAGACGAC
CCAAGACTACTGGATACTGACCGATGCGAGAGGTTCTCTAGGTGTGTAGA
TACTTGATAGAAAGTGACCTTACCCTGACTGATATACAATATGATACACC
CCCTCTATTATACCAAAAGATATTTACCTGGCTAATTGGATATGTCTTTC
CTGCCCCTTTTGTTGTATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d06.g1 MSMg01no109_d06.g1 CHROMAT_FILE:
MSMg01no109_d06.g1 PHD_FILE: MSMg01no109_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:20 2005
         (247 letters)



>mm_chr5_22164618_22165267
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 246/250 (98%), Gaps = 3/250 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttctatttaagccacaagagcaacagggagaagcagaatgtaattatccaaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattttctatttaagccacaagagcaacagggagaagcagaatgtaattatccaaattag 260

                                                                       
Query: 61  aagttttctctgacactgaggtcaccatctctgctatttgtggaagtgccaagggatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttttctctgacactgaggtcaccatctctgctatttgtggaagtgccaagggatatt 320

                                                                       
Query: 121 tattgatcacatgcagccaagtatactgctttatgtctctgctgatggacaaccccctta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tattgatcacatgcagccaagtatactgctttatgtctctgttgatggacaaccccctta 380

                                                                       
Query: 181 ggcacacagcctctaaatactacagcagtgaaaaat---gacatggccaaaaatgttctt 237
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 381 ggcacacagcctctaaatactacagcagtgaaaaattatgacatggccaaaaatgttctt 440

                     
Query: 238 cagcatttca 247
           ||||||||||
Sbjct: 441 cagcatttca 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 650
Length adjustment: 9
Effective length of query: 238
Effective length of database: 641
Effective search space:   152558
Effective search space used:   152558
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)